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improve xyz read/write. add gz support for xyz and pdb #656

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improve xyz read/write. add gz support for xyz and pdb

improve xyz read/write. add gz support for xyz and pdb #656

Triggered via push December 14, 2023 11:49
@stefdoerrstefdoerr
pushed 3ceda3d
main
Status Success
Total duration 15m 33s
Artifacts –

test_and_publish.yml

on: push
Matrix: test
Matrix: deploy_linux
Matrix: deploy_osx_win
Matrix: deploypypi
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36 warnings
test (ubuntu-latest, 3.10)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test (ubuntu-latest, 3.10)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (ubuntu-latest, 3.10)
Mamba support is still experimental and can result in differently solved environments!
test (ubuntu-latest, 3.10)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (ubuntu-latest, 3.8)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test (ubuntu-latest, 3.8)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (ubuntu-latest, 3.8)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (ubuntu-latest, 3.8)
Mamba support is still experimental and can result in differently solved environments!
test (ubuntu-latest, 3.9)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test (ubuntu-latest, 3.9)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (ubuntu-latest, 3.9)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (ubuntu-latest, 3.9)
Mamba support is still experimental and can result in differently solved environments!
test (macos-latest, 3.8)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test (macos-latest, 3.8)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (macos-latest, 3.8)
Mamba support is still experimental and can result in differently solved environments!
test (macos-latest, 3.8)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (windows-latest, 3.8)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test (windows-latest, 3.8)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (windows-latest, 3.8)
Mamba support is still experimental and can result in differently solved environments!
test (windows-latest, 3.8)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (macos-latest, 3.10)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test (macos-latest, 3.10)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (macos-latest, 3.10)
Mamba support is still experimental and can result in differently solved environments!
test (macos-latest, 3.10)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (macos-latest, 3.9)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test (macos-latest, 3.9)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (macos-latest, 3.9)
Mamba support is still experimental and can result in differently solved environments!
test (macos-latest, 3.9)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (windows-latest, 3.9)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test (windows-latest, 3.9)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (windows-latest, 3.9)
Mamba support is still experimental and can result in differently solved environments!
test (windows-latest, 3.9)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (windows-latest, 3.10)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test (windows-latest, 3.10)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (windows-latest, 3.10)
Unexpected input(s) 'uses-mamba', valid inputs are ['installer-url', 'miniconda-version', 'miniforge-variant', 'miniforge-version', 'conda-version', 'conda-build-version', 'environment-file', 'activate-environment', 'python-version', 'add-anaconda-token', 'add-pip-as-python-dependency', 'allow-softlinks', 'auto-activate-base', 'auto-update-conda', 'condarc-file', 'channel-alias', 'channel-priority', 'channels', 'show-channel-urls', 'use-only-tar-bz2', 'remove-profiles', 'mamba-version', 'use-mamba', 'architecture', 'clean-patched-environment-file', 'run-post']
test (windows-latest, 3.10)
Mamba support is still experimental and can result in differently solved environments!