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30 Open 74 Closed
30 Open 74 Closed
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Issues list

Documentation needs an update doco Issue is related to documentation
#364 opened May 22, 2024 by delocalizer
Difficulty Extracting Telomere Length Data from qmotif XML Output
#351 opened Apr 4, 2024 by CHOWDHURY098
1
addition of hg38 telomere coordinates for qmotif
#346 opened Feb 15, 2024 by squigzzz
3
multi threading bug in XmlUtils.updateMapWithLimit
#333 opened May 24, 2023 by holmeso
org.qcmg.picard.SAMFileReaderFactory keeps spawning processes
#330 opened Mar 20, 2023 by ZhaoxiangSimonCai
@ChristinaXu2017
7
Default value for build (37) is always used in maf file
#324 opened Oct 14, 2022 by holmeso
input format issue on qbasepileup indel mode
#305 opened Feb 28, 2022 by ChristinaXu2017
input output format issue on qbasepileup coverage mode
#304 opened Feb 28, 2022 by ChristinaXu2017
qp2 produces different output with different threading options bug Something isn't working
#289 opened Dec 6, 2021 by holmeso
@ChristinaXu2017
7
QSamToFastq.java exception
#281 opened Sep 20, 2021 by ChristinaXu2017
At least some of our VCFs are invalid according to the VCF spec.
#265 opened Jun 14, 2021 by grendeloz
7
qprofiler - Fastq mode can't convert String to Integer
#248 opened Feb 25, 2021 by holmeso
1
to deprecate qSNP related QSnpGATKRecord and QSnpRecord
#231 opened Jan 31, 2021 by ChristinaXu2017
1
documentation for qmotif points to sourceforge for tar location
#225 opened Jan 19, 2021 by holmeso
Exception control
#219 opened Dec 7, 2020 by ChristinaXu2017
Patten.split vs String.split
#218 opened Dec 7, 2020 by ChristinaXu2017
tidy up classes loading relationship
#217 opened Dec 4, 2020 by ChristinaXu2017
1
3
Scaled Counts is Negative 1 doco Issue is related to documentation
#207 opened Nov 3, 2020 by DarioS
xml indentation issue
#204 opened Oct 31, 2020 by ChristinaXu2017
Add Details to qMotif Documentation
#203 opened Oct 29, 2020 by DarioS
encoding issue in qio
#198 opened Oct 22, 2020 by ChristinaXu2017
buffered IO vs stream IO
#197 opened Oct 22, 2020 by ChristinaXu2017
Combined variants at same position - how to report
#155 opened Feb 17, 2020 by holmeso
Adjust wdl task runtime attributes (mem, cpu etc) depending on size of input enhancement New feature or request
#134 opened Oct 24, 2019 by holmeso
@shimbalama
3
COV vcf header should contain coverage cutoff values used enhancement New feature or request is anybody here a genome biologist? Need guidance from a biologist in order to proceed https://www.youtube.com/watch?v=3mnEnORmwOM
#85 opened Jul 19, 2019 by holmeso Vcf header tidy-up
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