Pyhton interface to access data from The Comparative Toxicogenomics Database (CTD)
pip3 install ctd-python
from ctd import get_data
- GeneInteractionTypes
- ChemicalPathwaysEnriched
- GeneDisease
- GenePathways
- DiseasePathways
- ChemocalPhenoTypeInteractions
- Chemicals
- Genes
- ChemicalGeneInteractions
- Chemicals
- Diseases
gene_df = get_data('Genes')
tnf_df = gene_df[gene_df['GeneSymbol'] == 'TNF']
chem_gene_df = get_data('ChemicalGeneInteractions')
tnf_chem_df = chem_gene_df[chem_gene_df['GeneSymbol'] == 'TNF']
child_diseases = get_disease_hierarchy('MESH:D010300')