Software table update

docs/software/01table.md

@@ -50,7 +50,7 @@
 | libtirpc | Libtirpc is a port of Suns Transport-Independent RPC library to Linux. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">1.3.2-GCCcore-10.3.0</td></tr></tbody></table> 
 | TopHat | TopHat is a fast splice junction mapper for RNA-Seq reads. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.1.2-iimpi-2019b</td></tr></tbody></table> 
 | cytosim | Cytosim is a cytoskeleton simulation engine written in <br>C++ working on Mac OS, GNU/Linux and Windows (with Cygwin). | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">20190117-gomkl-2019a-mkl</td></tr></tbody></table> 
-| networkx | NetworkX is a Python package for the creation, manipulation,<br>and study of the structure, dynamics, and functions of complex networks. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.4-foss-2020a-Python-3.8.2</td></tr></tbody></table> 
+| beagle-lib | BEAGLE-lib | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">3.1.2-GCC-10.2.0</td></tr><tr><td><b>CASCADES</b></td></tr><tr><td style="background-color: white">2.1.2</td></tr><tr><td><b>DRAGONSTOOTH</b></td></tr><tr><td style="background-color: white">2.1.2</td></tr></tbody></table> 
 | double-conversion | Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">3.1.5-GCCcore-10.2.0<br>3.1.4-GCCcore-8.3.0<br>3.1.5-GCCcore-10.3.0<br>3.1.5-GCCcore-9.3.0</td></tr></tbody></table> 
 | x264 | x264 | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">20191217-GCCcore-9.3.0<br>20190925-GCCcore-8.3.0<br>20210414-GCCcore-10.3.0<br>20201026-GCCcore-10.2.0</td></tr><tr><td><b>CASCADES</b></td></tr><tr><td style="background-color: white">7.5.2020<br>1.0</td></tr><tr><td><b>DRAGONSTOOTH</b></td></tr><tr><td style="background-color: white">7.5.2020<br>1.0</td></tr></tbody></table> 
 | x265 | <br> x265 is a free software library and application for encoding video streams<br> into the H.265 AVC compression format, and is released under the terms of<br> the GNU GPL.<br> | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">3.2-GCCcore-8.3.0<br>3.5-GCCcore-10.3.0<br>3.3-GCCcore-9.3.0<br>3.3-GCCcore-10.2.0</td></tr></tbody></table> 
@@ -82,6 +82,7 @@
 | Hypre | Hypre is a library for solving large, sparse linear systems of equations on massively<br> parallel computers. The problems of interest arise in the simulation codes being developed at LLNL<br> and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.18.2-intel-2019b</td></tr></tbody></table> 
 | freetype | <br> FreeType 2 is a software font engine that is designed to be small, efficient,<br> highly customizable, and portable while capable of producing high-quality<br> output (glyph images). It can be used in graphics libraries, display servers,<br> font conversion tools, text image generation tools, and many other products<br> as well.<br> | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.10.1-GCCcore-9.3.0<br>2.10.1-GCCcore-8.3.0<br>2.9.1-GCCcore-8.2.0<br>2.10.4-GCCcore-10.3.0<br>2.10.3-GCCcore-10.2.0</td></tr></tbody></table> 
 | Ghostscript | Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to<br> different targets. It used to be part of the cups printing stack, but is no longer used for that. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">9.53.3-GCCcore-10.2.0<br>9.52-intel-2019b<br>9.52-GCCcore-9.3.0<br>9.54.0-GCCcore-10.3.0</td></tr></tbody></table> 
+| utf8proc | utf8proc is a small, clean C library that provides Unicode normalization, case-folding, <br>and other operations for data in the UTF-8 encoding. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.5.0-GCCcore-10.2.0</td></tr></tbody></table> 
 | nettle | Nettle is a cryptographic library that is designed to fit easily<br> in more or less any context: In crypto toolkits for object-oriented<br> languages (C++, Python, Pike, ...), in applications like LSH or GNUPG,<br> or even in kernel space. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">3.4.1-GCCcore-8.2.0<br>3.7.2-GCCcore-10.3.0<br>3.6-GCCcore-10.2.0<br>3.5.1-GCCcore-8.3.0</td></tr></tbody></table> 
 | VirtualGL | VirtualGL is an open source toolkit that gives any Linux or <br>Unix remote display software the ability to run OpenGL applications with full <br>hardware acceleration. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.6.2-GCCcore-9.3.0</td></tr></tbody></table> 
 | aspect-2.2.0 | AspectDESCRIPTION | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">intel-2019b</td></tr></tbody></table> 
@@ -148,6 +149,7 @@
 | LibTIFF | tiff: Library and tools for reading and writing TIFF data files | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">4.1.0-GCCcore-9.3.0<br>4.2.0-GCCcore-10.3.0<br>4.0.10-GCCcore-8.3.0<br>4.1.0-GCCcore-8.3.0<br>4.1.0-GCCcore-10.2.0</td></tr></tbody></table> 
 | gomkl | GNU Compiler Collection (GCC) based compiler toolchain with OpenMPI and MKL | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2020a<br>2021a<br>2019a<br>2020b</td></tr></tbody></table> 
 | APR-util | Apache Portable Runtime (APR) util libraries. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">1.6.1-GCCcore-10.2.0</td></tr></tbody></table> 
+| pocl | Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">1.6-GCC-10.2.0</td></tr></tbody></table> 
 | OpenBLAS | OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">0.3.9-GCC-9.3.0<br>0.3.12-GCC-10.2.0<br>0.3.15-GCC-10.3.0</td></tr></tbody></table> 
 | molmod | MolMod is a Python library with many compoments that are useful to write molecular modeling programs. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">1.4.5-foss-2020a-Python-3.8.2</td></tr></tbody></table> 
 | libpng | libpng is the official PNG reference library | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">1.6.36-GCCcore-8.2.0<br>1.6.37-GCCcore-10.2.0<br>1.6.37-GCCcore-8.3.0<br>1.6.37-GCCcore-10.3.0<br>1.6.37-GCCcore-9.3.0</td></tr></tbody></table> 
@@ -188,6 +190,7 @@
 | prodigal | Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.6.3-GCCcore-10.2.0</td></tr></tbody></table> 
 | PROJ | Program proj is a standard Unix filter function which converts<br>geographic longitude and latitude coordinates into cartesian coordinates | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">7.0.0-GCCcore-9.3.0<br>8.0.1-GCCcore-10.3.0</td></tr></tbody></table> 
 | picard | Picard: A set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.21.6-Java-11</td></tr><tr><td><b>DRAGONSTOOTH</b></td></tr><tr><td style="background-color: white">1.138</td></tr></tbody></table> 
+| networkx | NetworkX is a Python package for the creation, manipulation,<br>and study of the structure, dynamics, and functions of complex networks. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.4-foss-2020a-Python-3.8.2</td></tr></tbody></table> 
 | dealii-9.2.0 | SOFTWAREDESCRIPTION | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">intel-2019b</td></tr></tbody></table> 
 | pkg-config | <br> pkg-config is a helper tool used when compiling applications and libraries.<br> It helps you insert the correct compiler options on the command line so an<br> application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0`<br> for instance, rather than hard-coding values on where to find glib (or other<br> libraries).<br> | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">0.29.2-GCCcore-8.3.0<br>0.29.2-GCCcore-10.2.0<br>0.29.2-GCCcore-8.2.0<br>0.29.2-GCCcore-10.3.0<br>0.29.2-GCCcore-9.3.0</td></tr></tbody></table> 
 | SLEPc | SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution<br> of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for<br> either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a<br> partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">3.12.2-intel-2019b</td></tr></tbody></table> 
@@ -197,6 +200,7 @@
 | libglvnd | libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">1.3.3-GCCcore-10.3.0<br>1.3.2-GCCcore-10.2.0<br>1.2.0-GCCcore-9.3.0<br>1.2.0-GCCcore-8.3.0</td></tr></tbody></table> 
 | ImageMagick | ImageMagick | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">7.0.10-35-GCCcore-10.2.0<br>7.0.10-1-intel-2019b<br>7.0.10-1-GCCcore-9.3.0<br>7.0.11-14-GCCcore-10.3.0</td></tr><tr><td><b>CASCADES</b></td></tr><tr><td style="background-color: white">6.8.9<br>7.0.10</td></tr><tr><td><b>DRAGONSTOOTH</b></td></tr><tr><td style="background-color: white">7.1.0</td></tr></tbody></table> 
 | PyCharm | PyCharm Community Edition: Python IDE for Professional Developers | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2021.1.1<br>2019.3.1</td></tr></tbody></table> 
+| MrBayes | MrBayes is a program for Bayesian inference and model choice across<br> a wide range of phylogenetic and evolutionary models. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">3.2.7-gompi-2020b</td></tr></tbody></table> 
 | SWIG | SWIG is a software development tool that connects programs written in C and C++ with<br> a variety of high-level programming languages. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">4.0.1-GCCcore-9.3.0<br>4.0.1-GCCcore-8.3.0</td></tr></tbody></table> 
 | ATK | <br> ATK provides the set of accessibility interfaces that are implemented by other<br> toolkits and applications. Using the ATK interfaces, accessibility tools have<br> full access to view and control running applications.<br> | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.36.0-GCCcore-9.3.0<br>2.36.0-GCCcore-10.2.0</td></tr></tbody></table> 
 | libGLU | The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.  | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">9.0.0-GCCcore-8.2.0<br>9.0.1-GCCcore-10.2.0<br>9.0.1-GCCcore-8.3.0<br>9.0.1-GCCcore-10.3.0<br>9.0.1-GCCcore-9.3.0</td></tr></tbody></table> 
@@ -216,6 +220,7 @@
 | typing-extensions | Typing Extensions – Backported and Experimental Type Hints for Python | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">3.7.4.3-GCCcore-10.2.0</td></tr></tbody></table> 
 | impi | Intel MPI Library, compatible with MPICH ABI | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2021.2.0-intel-compilers-2021.2.0<br>2019.9.304-iccifort-2020.4.304<br>2018.5.288-iccifort-2019.5.281</td></tr></tbody></table> 
 | bokeh | Statistical and novel interactive HTML plots for Python | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.0.2-foss-2020a-Python-3.8.2<br>2.2.3-foss-2020b-Python-3.8.6</td></tr></tbody></table> 
+| Clang | C, C++, Objective-C compiler, based on LLVM.  Does not<br> include C++ standard library -- use libstdc++ from GCC. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">11.0.1-GCCcore-10.2.0</td></tr></tbody></table> 
 | WPS | WRF Preprocessing System (WPS) for WRF. The Weather Research and Forecasting (WRF) Model is<br> a next-generation mesoscale numerical weather prediction system designed to serve both operational<br> forecasting and atmospheric research needs. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">4.2-foss-2020b-dmpar</td></tr></tbody></table> 
 | kim-api | Open Knowledgebase of Interatomic Models.<br><br>KIM is an API and OpenKIM is a collection of interatomic models (potentials) for<br>atomistic simulations.  This is a library that can be used by simulation programs<br>to get access to the models in the OpenKIM database.<br><br>This EasyBuild only installs the API, the models can be installed with the<br>package openkim-models, or the user can install them manually by running<br>    kim-api-collections-management install user MODELNAME<br>or<br>    kim-api-collections-management install user OpenKIM<br>to install them all.<br>  | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.1.3-foss-2020a</td></tr></tbody></table> 
 | HTSlib | A C library for reading/writing high-throughput sequencing data.<br> This package includes the utilities bgzip and tabix | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">1.11-GCC-10.2.0<br>1.10.2-GCC-9.3.0</td></tr></tbody></table> 
@@ -311,7 +316,7 @@
 | pixman | <br> Pixman is a low-level software library for pixel manipulation, providing<br> features such as image compositing and trapezoid rasterization. Important<br> users of pixman are the cairo graphics library and the X server.<br> | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">0.40.0-GCCcore-10.2.0<br>0.38.4-GCCcore-8.3.0<br>0.38.4-GCCcore-9.3.0<br>0.40.0-GCCcore-10.3.0</td></tr></tbody></table> 
 | NSS | Network Security Services (NSS) is a set of libraries designed to support cross-platform development<br> of security-enabled client and server applications. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">3.65-GCCcore-10.3.0<br>3.51-GCCcore-9.3.0<br>3.45-GCCcore-8.3.0</td></tr></tbody></table> 
 | BUSCO | BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">5.0.0-foss-2020b</td></tr></tbody></table> 
-| utf8proc | utf8proc is a small, clean C library that provides Unicode normalization, case-folding, <br>and other operations for data in the UTF-8 encoding. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">2.5.0-GCCcore-10.2.0</td></tr></tbody></table> 
+| Z3 | <br> Z3 is a theorem prover from Microsoft Research.<br> | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">4.8.10-GCCcore-10.2.0</td></tr></tbody></table> 
 | ncdf4 | ncdf4: Interface to Unidata netCDF (version 4 or earlier) format data files | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">1.17-foss-2020b-R-4.0.3</td></tr></tbody></table> 
 | GObject-Introspection | GObject introspection is a middleware layer between C libraries<br> (using GObject) and language bindings. The C library can be scanned at<br> compile time and generate a metadata file, in addition to the actual<br> native C library. Then at runtime, language bindings can read this<br> metadata and automatically provide bindings to call into the C library. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">1.66.1-GCCcore-10.2.0<br>1.63.1-GCCcore-8.3.0-Python-3.7.4<br>1.68.0-GCCcore-10.3.0<br>1.64.0-GCCcore-9.3.0-Python-3.8.2</td></tr></tbody></table> 
 | PyYAML | PyYAML is a YAML parser and emitter for the Python programming language. | <table><thead></thead><tbody><tr><td><b>TINKERCLIFFS</b></td></tr><tr><td style="background-color: white">5.3.1-GCCcore-10.2.0<br>5.1.2-GCCcore-8.3.0<br>5.3-GCCcore-9.3.0</td></tr></tbody></table> 
@@ -367,7 +372,6 @@
 | cudnn | cuDNN | GPU-accelerated library for deep neural networks | <table><thead></thead><tbody><tr><td><b>CASCADES</b></td></tr><tr><td style="background-color: white">7.0<br>7.1</td></tr><tr><td><b>HUCKLEBERRY</b></td></tr><tr><td style="background-color: white">7.6.5</td></tr></tbody></table> 
 | tcl | Tool command language | <table><thead></thead><tbody><tr><td><b>CASCADES</b></td></tr><tr><td style="background-color: white">8.6.9</td></tr></tbody></table> 
 | netcdf | Network Common Data Form | <table><thead></thead><tbody><tr><td><b>CASCADES</b></td></tr><tr><td style="background-color: white">4.3.3.1<br>4.1.3</td></tr><tr><td><b>DRAGONSTOOTH</b></td></tr><tr><td style="background-color: white">4.3.3.1</td></tr><tr><td><b>HUCKLEBERRY</b></td></tr><tr><td style="background-color: white">4.3.3.1</td></tr></tbody></table> 
-| beagle-lib | BEAGLE-lib | <table><thead></thead><tbody><tr><td><b>CASCADES</b></td></tr><tr><td style="background-color: white">2.1.2</td></tr><tr><td><b>DRAGONSTOOTH</b></td></tr><tr><td style="background-color: white">2.1.2</td></tr></tbody></table> 
 | mysql | MySQL: a very fast and reliable SQL database server | <table><thead></thead><tbody><tr><td><b>CASCADES</b></td></tr><tr><td style="background-color: white">5.6.14</td></tr><tr><td><b>DRAGONSTOOTH</b></td></tr><tr><td style="background-color: white">5.6.14<br>5.5.37</td></tr></tbody></table> 
 | LBPM | Lattice Boltzmann simulator | <table><thead></thead><tbody><tr><td><b>CASCADES</b></td></tr><tr><td style="background-color: white">4.9.2018</td></tr></tbody></table> 
 | singularity | Singularity is an open source container platform designed to be simple, fast, and secure. | <table><thead></thead><tbody><tr><td><b>CASCADES</b></td></tr><tr><td style="background-color: white">3.3.0<br>3.7.3<br>3.5.1</td></tr><tr><td><b>DRAGONSTOOTH</b></td></tr><tr><td style="background-color: white">3.3.0<br>3.5.1</td></tr><tr><td><b>HUCKLEBERRY</b></td></tr><tr><td style="background-color: white">3.3.0<br>3.5.1</td></tr></tbody></table>