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fix: Fixed single_run and added multiple_tr_chaining
- Created new method for Iterated Chaining method (also writes to a file) - Fixed single_run function to now return the NFE value. - Silenced all mid-run print_schedule and plot_scores, plot_fig all to False ( now all runs happen silently without printing or popping with a plot in btwn runs' did not match any file(s) known to git
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