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Ajaingithub/README.md
  • 👋 Hi, I’m Abhinav Jain, Currently a postdoctoral fellow in Mayo Clinic Rochester, MN
  • 👀 I work in single cell, spatial, bulk multimodal and multiomics datasets in immune related disorders. Further I am interested in predicting the immune celltype using Machine Learning.
  • 🌱 I’m currently using R, Python, Nextflow, and Bash/Shell scripting.
  • 💞️ I’m looking to collaborate in immunology, autoimmune disorders, immune aging, SARS-CoV-2, population genomics, and rare disease projects.
  • 📫 How to reach me abhinavjj@gmail.com.

Pinned

  1. RShiny_CoV2 RShiny_CoV2 Public

    Develop the RShiny Web Database for scCITESeq in Aging

    R

  2. scCITESeq_pipeline scCITESeq_pipeline Public

    Batch and Modality Integration of single cell CITEseq dataset

    R 1

  3. scTCRseq scTCRseq Public

    TCR Downstream analysis clonal sharing, diversity, and clonality

    R

  4. ATACseq ATACseq Public

    Downstream Analysis for bulk ATACseq

    R 2

  5. scmultiome_preprocessing scmultiome_preprocessing Public

    The automated single cell RNA and single cell ATAC preprocessing pipeline using Seurat and Signac.

    R 1

  6. Gene_Regulatory_Network_FigR Gene_Regulatory_Network_FigR Public

    Based on the scmultiome data, we can build the gene regulatory network using a automated function for FigR.

    R 1