checks

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,50 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

README.Rmd

@@ -16,6 +16,7 @@ knitr::opts_chunk$set(
 # CalcThemAll.PRM <img src="man/figures/hex.png" align="right" height="138" alt="tidyr website" /></a>
 
 <!-- badges: start -->
+[![R-CMD-check](https://github.com/AlexWaterboyBezzina/CalcThemAll.PRM/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/AlexWaterboyBezzina/CalcThemAll.PRM/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 This package provides code for estimating the combined toxicity of measured pesticides using their Species Sensitivity Distributions (SSDs) in a multi-substance, potentially affected fraction approach. The resulting value is an estimate of the percentage of species impacted by the measured pesticides; a value which is referred to in this package as the **Pesticide Risk Metric (PRM)**. This is based on the Queensland Department of Environment and Science Water Quality & Investigation's [method](https://www.publications.qld.gov.au/dataset/method-development-pesticide-risk-metric-baseline-condition-of-waterways-to-gbr/resource/c65858f9-d7ba-4aef-aa4f-e148f950220f) used in the Reef 2050 Water Quality Improvement Plan. The main difference is the ability to add different pesticides to be measured provided they have one of the following SSD distributions:

README.md

@@ -4,6 +4,8 @@
 # CalcThemAll.PRM <img src="man/figures/hex.png" align="right" height="138" alt="tidyr website" /></a>
 
 <!-- badges: start -->
+
+[![R-CMD-check](https://github.com/AlexWaterboyBezzina/CalcThemAll.PRM/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/AlexWaterboyBezzina/CalcThemAll.PRM/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 This package provides code for estimating the combined toxicity of
@@ -120,10 +122,10 @@ head(Canto_wet_season_Total_PRM)
 #>   `Site Name`    `Sampling Year` `Total PRM`
 #>   <chr>          <chr>                 <dbl>
 #> 1 Celestial City 2017-2018             21.0 
-#> 2 Mt Lunar       2017-2018              5.98
+#> 2 Mt Lunar       2017-2018              5.96
 #> 3 Violet Town    2017-2018             37.5 
-#> 4 Celestial City 2018-2019             16.9 
-#> 5 Mt Lunar       2018-2019              3.94
+#> 4 Celestial City 2018-2019             16.8 
+#> 5 Mt Lunar       2018-2019              3.95
 #> 6 Violet Town    2018-2019             31.2
 ```