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Releases: AllTheBacteria/AllTheBacteria

Version 0.2

22 May 13:39
@martinghunt martinghunt
v0.2
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Version 0.2 Latest
Latest

The data are here: https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/

Changes from release 0.1 are documented in detail in the release 0.2 readme: https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/README.md

Summary of changes:

  • Approximately 12k contigs were removed, due to matching the human genome
  • Reran assembly stats and checkm2 on the changed assemblies
  • The "high quality" dataset changed slightly because of the assemblies changing
  • Species call for each sample tidied up
  • Added phylign indexes for searching/aligning query sequences (see https://github.com/AllTheBacteria/Phylign/blob/main/README.md)
  • Updated sketchlib indexes
  • Added file of md5sum of all files in the release
Assets 2