Summer Workshop on the Dynamic Brain

Official Announcement

This repository provides a python wrapper library for accessing and manipulating voxel data from the Allen Mouse Connectivity Atlas (http://connectivity.brain-map.org/). The library may be updated from time-to-time over the course, so if possible please check out a clone for easy updating. Use python setup.py --version to check your version.

Check out the wiki page for helpful resources

Library Version:

Current version is defined here

Library Examples:

Example scripts are located in "examples" subdirectory

Installation

Install this package by:

$ cd /path/to/repo.git
$ python setup.py install

Download the connectivity atlas (from a python terminal):

$ from friday_harbor.data.regenerate_data import regenerate_data
$ regenerate_data('/path/to/data/directory/')

Dependencies (python packages):

numpy/scipy
h5py
requests