Scripts used for Data processing and visualization for the paper Bosiljka Tasic, et al., "Shared and distinct transcriptomic cell types across neocortical areas." (2018) Nature.
These scripts were not written with portability in mind, and frequently refer to local file structures. They are provided as-is as a record of the analytical processes used in the paper.
To perform similar analyses on your own data, we recommend utilizing the R packages built around this analysis, available at https://github.com/AllenInstitute/scrattch/ .
To cite use of these scripts or parts thereof, please use:
Tasic, et al. "Shared and distinct transcriptomic cell types across neocortical areas." (2018) Nature.
The license for use of these scripts is available on Github at: https://github.com/AllenInstitute/tasic2018analysis/blob/master/LICENSE
We are not currently supporting this code, but simply releasing it to the community AS IS but are not able to provide any guarantees of support. The community is welcome to submit issues, but you should not expect an active response.