SVZSingleCell

This is a repository for R code used to generate datasets used in the study published in July 2021 in eLife, as well as code to generate the manuscript figure panels.

The study can be found at:

eLife (peer-reviewed final version)

BioRxiv(preprint version)

Interactive Single-Cell Data is published at:

UCSC Single Cell Browser: https://svzneurogeniclineage.cells.ucsc.edu

Raw count matricies and processed Seurat data objects are deposited at the following GEO link:

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE165555

Rmd File Descriptions

Data Preprocessing

scRNA-Seq dataset: Pre-processing/scRNA-Seq/

sNucRNA-Seq dataset: Pre-processing/sNucRNA-Seq/

Dataset Analyses

Figure 1 & Supplements

Figure 1 & Supplement 2: Analysis/BcellsVsAstrocytes.Rmd

Supplement 3: Analysis/sNucRNASeq_Fig1Supplement3.Rmd

Figure 3 & Supplement

Analysis/BCellsAnalysis_Fig3_Fig3Supplement1.Rmd

Figure 5 & Supplement

Analysis/A.cells.R

Analysis/Acell_NucleiLabelTransfer_Fig5.Rmd

Figure 6 & Supplement

Analysis/AUCell.Rmd