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# Metabol | ||
The package of preprocessing and statistical analysis of metabolomic data sets made by logratio methodology. | ||
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What is it? | ||
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- The preprocessing: quality control samples treatment and zero imputation | ||
- The comparison of the logratio methodology with the other transformations/scalings: log, ln, PQN, no transformation, ln(PQN), Pareto | ||
scaling | ||
- Multivariate methods: PCA, PLS-DA (also with VIP plots and permutation test), VIP plots, OPLS-DA (also with permutation test), cluster analysis | ||
- Univariate methods: boxplots, ROC curves, volcano plots | ||
- Statistical tests: Shapiro-Wilk test, ANOVA, Kruskal-Wallis test, t-test, permutation test | ||
- The analysis of correlations in data | ||
- The analysis of outliers in data | ||
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Getting Started | ||
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### Dependencies | ||
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The package has dependencies on | ||
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R (>= 2.10), openxlsx, sm, ropls | ||
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### Installation | ||
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Installion of `Metabol` is really easy for registered users (when the R-tools are installed). Just use | ||
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library(devtools) | ||
install_github("Metabol", "AlzbetaG") |