Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add ability to create residue hydrogen bond interaction matrix. #960

Merged
merged 14 commits into from Mar 30, 2022

Conversation

drroe
Copy link
Contributor

@drroe drroe commented Mar 30, 2022

Version 6.4.5. Add some new keywords for hbond action for determining hydrogen bond interaction matrix by residue.

[uuresmatrix [uuresmatrixnorm {none|frames}] [uuresmatrixout <file>]]

[uuresmatrix] If specified, create a matrix with aspect [UUresmat] containing # of hydrogen bonds between each possible solute residue pair.

[uuresmatrixnorm {none|frames}] Control how matrix is normalized: none=no normalization, frames=normalize by total # frames.

[uuresmatrixout ] If specified, write matrix data to specified file.

Also protects a few more tests in parallel from too many processes.

@drroe drroe self-assigned this Mar 30, 2022
@drroe drroe merged commit f1783be into Amber-MD:master Mar 30, 2022
@drroe drroe deleted the hbond.matrix branch March 30, 2022 19:26
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant