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@jluebeck jluebeck released this 13 Mar 22:01
· 86 commits to master since this release
v1.3.r4
0c43fcd
  • Fixes a longstanding bug in the visualizations, where the coverage values shown in the plot are wildly incorrect (too high). This issue did not affect the graph/cycles files, just the plots. See diagram below.
  • Smoother coverage plotting (less jaggedness in visualization for smaller segments).
  • Adds a test at the beginning to ensure Mosek is correctly installed and the license is in place. Previously it would fail silently partway through the run, making it appear similar to a no-amp sample.
  • Improve handling of the coverage.stats file.

The other outputs are the same, however there is a modest speedup to AA following these improvements. Plotting amplicons is ~4x faster. For moderately complex AA samples, it seems the total speedup is around 10%-15%, and for simple cases the total speedup is around 2x.

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