-
Notifications
You must be signed in to change notification settings - Fork 3
/
nextflow.config
50 lines (42 loc) · 1.08 KB
/
nextflow.config
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
/*
=======================================
Andersen Lab Variant Calling Pipeline
=======================================
*/
process.cache = 'lenient'
import java.time.*
Date now = new Date()
manifest {
homePage = "http://www.andersenlab.org"
description = "C. elegans variant calling"
mainScript = "main.nf"
nextflowVersion = '>=19.09.0-edge'
version = "2.0.0"
}
params {
tracedir = "pipeline_info"
timestamp = now.format("yyyyMMdd-HH-mm-ss")
}
profiles {
local { includeConfig 'conf/local.config' }
standard { includeConfig 'conf/quest.config' }
quest { includeConfig 'conf/quest.config' }
debug { includeConfig 'conf/quest_debug.config' }
gcp { includeConfig 'conf/gcp.config' }
}
timeline {
enabled = true
file = "${params.tracedir}/${params.timestamp}_timeline.html"
}
report {
enabled = true
file = "${params.tracedir}/${params.timestamp}_report.html"
}
trace {
enabled = true
file = "${params.tracedir}/${params.timestamp}_trace.txt"
}
dag {
enabled = true
file = "${params.tracedir}/${params.timestamp}_dag.svg"
}