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@AndersenLab

Andersen Lab

Johns Hopkins University

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    HTML 4 3

Repositories

Showing 10 of 199 repositories
  • nemascan-sims-nf Public

    Nextflow workflow for running GWA simulations

    AndersenLab/nemascan-sims-nf’s past year of commit activity
    Nextflow 0 0 5 0 Updated Feb 13, 2026
  • HDR_haplotypePlotter Public

    R script that generates gene-level visualization of hyper-divergent haplotypes using G2G alignments

    AndersenLab/HDR_haplotypePlotter’s past year of commit activity
    R 0 1 0 0 Updated Feb 11, 2026
  • trim-fq-nf Public
    AndersenLab/trim-fq-nf’s past year of commit activity
    Nextflow 0 MIT 1 2 0 Updated Feb 11, 2026
  • Ce_geneAnno-sh Public

    This is a repository for storing all scripts related to genome assembly, gene annotation, SV calling, GFF/FA file manipulation, functional enrichment analysis, gene set visualization, and syntelog decompression.

    AndersenLab/Ce_geneAnno-sh’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 10, 2026
  • migrate-sims-to-db-nf Public
    AndersenLab/migrate-sims-to-db-nf’s past year of commit activity
    R 0 0 0 0 Updated Feb 10, 2026
  • cv Public

    Andersen Curriculum Vitae

    AndersenLab/cv’s past year of commit activity
    0 1 0 0 Updated Feb 6, 2026
  • wi-gatk Public

    The new GATK-based pipeline for wild isolate C. elegans strains

    AndersenLab/wi-gatk’s past year of commit activity
    Nextflow 1 3 6 0 Updated Feb 5, 2026
  • andersenlab.github.io Public

    Andersen Lab Website

    AndersenLab/andersenlab.github.io’s past year of commit activity
    HTML 2 MIT 3 0 2 Updated Feb 4, 2026
  • NemaScan Public

    GWA Mapping and Simulation with C. elegans, C. tropicalis, and C. briggsae

    AndersenLab/NemaScan’s past year of commit activity
    R 3 3 11 0 Updated Jan 29, 2026
  • pathogenDiscovery-sh Public

    C. elegans pathogen discovery through taxonomic classification from unaligned wild strains reads

    AndersenLab/pathogenDiscovery-sh’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 26, 2026
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