Changes to successfully get coverage report pt6

AndreMacedo88 · Jun 9, 2020 · 23eb434 · 23eb434
1 parent 3410bd3
commit 23eb434
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Showing 3 changed files with 7 additions and 4 deletions.
diff --git a/.coveragerc b/.coveragerc
@@ -1,9 +1,12 @@
 [run]
-include = VEnCode/internals.py
 omit =
     */docs/*
     */Files/*
     */scripts/*
     */tests/*
     */utils/*
-    */*a.py
+    VEnCode/*a.py
+    VEnCode/internals_extensions.py
+    VEnCode/__init__.py
+    VEnCode/common_variables.py
+    VEnCode/process.py
diff --git a/.travis.yml b/.travis.yml
@@ -15,4 +15,4 @@ install:
 script:
   - pytest VEnCode/tests/ --cov=VEnCode
 after_success:
-  - coveralls --include VEnCode/internals.py
+  - coveralls
diff --git a/VEnCode/tests/test_extensions.py b/VEnCode/tests/test_extensions.py
@@ -174,7 +174,7 @@ def setUp(self):
         """ Sets-up variables to be used in the tests. """
         self.validate_with = outside_data.Bed(source="get_val_ven_test.bed", files_path=self.files_path,
                                               folder="Validation_files")
-        self.vencode_obj = iext.GetVencodes(validate_with=(self.validate_with, (":", "\..", ",")),
+        self.vencode_obj = iext.GetVencodes(validate_with=(self.validate_with, (":", r"\..", ",")),
                                             inputs=self.inputs,
                                             files_path=self.files_path,
                                             cell_type=self.celltype_analyse,