Version 1.2.0 of the VEnCode tool

Minor changes and new funcionalities. This new version comes with improved scripts to generate pre-parsed data from the big FANTOM5 CAGE-seq data, improved documentation including the one submitted and hosted at https://vencode.readthedocs.io, and other minor changes.

Version 1.1.0 of the VEnCode tool

This version now simplifies in many ways how to retrieve VEnCodes and VEnCodes using validated regulatory elements. You can now issue commands to the utility file process.py from the command-line to get VEnCodes. Moreover, internals_extensions.py contain a few wrappers around the main methods, that create a pipeline for easy VEnCode generation in your scripts.

Version 1.0.1 of the VEnCode tool

This release now allows the users to use the algorithms developed for data that is not coming from the FANTOM5 CAGE-seq project.

Working package for both users and developers - Stable release

This was the version of the package used in the Ph.D. thesis by André Macedo, submitted in March 2020. For result reproducibility please refer to this version.

Working package for both users and developers

v0.2.1

- Version correction