mbaza-mv-predicted

A small Mbaza post-processing script to copy images from source folder to predicted folder.

Installation

The package can be installed directly from Github:

pip install git+https://github.com/Appsilon/mbaza-mv-predicted.git

Running

Once installed, run the mbaza_mv_predicted script to process the .csv output from Mbaza, for example:

mbaza_mv_predicted /path/to/mbaza_output_file.csv /path/to/images --output_path /path/to/output --p 0.5 --p_multi 0.2

This will output a new csv file in the output_path directory which contains the original Mbaza information and paths where the image has been copied to.

NOTE: this requires the same /path/to/images as provided to Mbaza.

The following commands are optional:

• output_path defaults to /path/to/images/predicted
• p is the probability threshold required to copy the image to the top predicted species (otherwise copied to unknown), defaults to 0 i.e. all images will be copied to a species folder
• p_multi is the probability threshold required to also copy images to the 2nd/3rd top predicted species folder (multi-label), default behaviour is off i.e. images will only be copied to one folder

For help with commands run:

mbaza_mv_predicted -h