fix documentation generation

ArchipelClient/Doxygen/Archipel.doxygen

@@ -678,8 +678,8 @@ EXCLUDE_SYMBOLS        = _*
 # directories that contain example code fragments that are included (see 
 # the \include command).
 
-EXAMPLE_PATH           = ./README \
-                         ./LICENSE
+EXAMPLE_PATH           = ../README.markdown \
+                         ../LICENSE
 
 # If the value of the EXAMPLE_PATH tag contains directories, you can use the 
 # EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp 
@@ -1122,7 +1122,7 @@ SERVER_BASED_SEARCH    = NO
 # If the GENERATE_LATEX tag is set to YES (the default) Doxygen will 
 # generate Latex output.
 
-GENERATE_LATEX         = NO
+GENERATE_LATEX         = YES
 
 # The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. 
 # If a relative path is entered the value of OUTPUT_DIRECTORY will be 

ArchipelClient/Doxygen/cleanup_headers

@@ -1,2 +1,2 @@
 #! /bin/sh
-rm -rf /tmp/tempDoc.doc
+# rm -rf /tmp/tempDoc.doc

ArchipelClient/Doxygen/make_headers.sh

@@ -8,7 +8,10 @@ fi
 
 echo "Copying source files..."
 cp -r . /tmp/tempDoc.doc
+cp -r ../README.markdown /tmp/tempDoc.doc/
+cp -r ../LICENSE /tmp/tempDoc.doc/
 rm -rf /tmp/tempDoc.doc/.git
+rm -rf /tmp/tempDoc.doc/Build
 
 echo "Processing source files..."
 find /tmp/tempDoc.doc -name "*.j" -exec sed -e '/@import.*/ d' -i '' {} \;