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Author: Lyron Juan Winderbaum Date : 18/8/2015 R code I have written for the analysis of MALDI imaging peaklist data is in localFunctions.R, I want to get around to wrapping it properly into a package at some point. tute.Rnw provides both: - a simple example of the use of knitr to produce a nicely formatted and reproducible LaTeX document, including bibtex referencing. - a step-by-step explanation of how to use most of the code in localFunctions.R Note that chunk output is stored in ./cache -- of particular note is the intial reading in of the peaklists in chunk `read_data', in order to reproduce this one would need to unpack the `A1.7z' archive containing the original peaklist data. TODO: Add a section on making ROC curves maybe? Meh.
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R code I have written for my PhD on the analysis of MALDI imaging data.
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