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Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data especially raw NGS data.

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AY179745.fasta
AY179745.fasta
 
 
Bos_taurus_Chr1.bed
Bos_taurus_Chr1.bed
 
 
Bos_taurus_Chr1_GTF.gtf
Bos_taurus_Chr1_GTF.gtf
 
 
D10845.fasta
D10845.fasta
 
 
D10847.fasta
D10847.fasta
 
 
Downloading_FASTA_for_retrieved_accession_id_from_NCBI.ipynb
Downloading_FASTA_for_retrieved_accession_id_from_NCBI.ipynb
 
 
Extracting_primary_structure_from_PDB_file.ipynb
Extracting_primary_structure_from_PDB_file.ipynb
 
 
GC_content_multi_fasta.ipynb
GC_content_multi_fasta.ipynb
 
 
GC_content_single_fasta.ipynb
GC_content_single_fasta.ipynb
 
 
GO_enrichment_analysis.py
GO_enrichment_analysis.py
 
 
README.md
README.md
 
 
Retrieving_secondary_structure_from_PDB_file_using_DSSP.ipynb
Retrieving_secondary_structure_from_PDB_file_using_DSSP.ipynb
 
 
adjacency_list.txt
adjacency_list.txt
 
 
append.py
append.py
 
 
average_read_length_fastq.py
average_read_length_fastq.py
 
 
basic_ops_biopython.py
basic_ops_biopython.py
 
 
biopython_parse_fasta.py
biopython_parse_fasta.py
 
 
biopython_parse_genbank.py
biopython_parse_genbank.py
 
 
biopython_read_fasta.py
biopython_read_fasta.py
 
 
biopython_read_genbank.py
biopython_read_genbank.py
 
 
bismark.txt
bismark.txt
 
 
check_pallindrome.ipynb
check_pallindrome.ipynb
 
 
cnt_ATGC_biopython.py
cnt_ATGC_biopython.py
 
 
code_request_001.py
code_request_001.py
 
 
count_ATGC.py
count_ATGC.py
 
 
count_headers.py
count_headers.py
 
 
count_kmers.ipynb
count_kmers.ipynb
 
 
dataset_294_4.txt
dataset_294_4.txt
 
 
demo.pdb
demo.pdb
 
 
downloaded_fasta01.fasta
downloaded_fasta01.fasta
 
 
extract_identical_headers.ipynb
extract_identical_headers.ipynb
 
 
extracting_only_gene_ids.ipynb
extracting_only_gene_ids.ipynb
 
 
fasta_converted_1.fasta
fasta_converted_1.fasta
 
 
fasta_converted_2.fasta
fasta_converted_2.fasta
 
 
fastq_to_fasta_1.ipynb
fastq_to_fasta_1.ipynb
 
 
fastq_to_fasta_2.ipynb
fastq_to_fasta_2.ipynb
 
 
file1.fasta
file1.fasta
 
 
file2.fasta
file2.fasta
 
 
file3.fasta
file3.fasta
 
 
find_GC_by_position.py
find_GC_by_position.py
 
 
gene_ids.txt
gene_ids.txt
 
 
generate_kmers.ipynb
generate_kmers.ipynb
 
 
generate_pallindrome.ipynb
generate_pallindrome.ipynb
 
 
getting_sequence_in_one_line.py
getting_sequence_in_one_line.py
 
 
gtf_to_bed.py
gtf_to_bed.py
 
 
headers.txt
headers.txt
 
 
histogram_of_qualities.py
histogram_of_qualities.py
 
 
input_fasta.fasta
input_fasta.fasta
 
 
mean_methylation_rate.py
mean_methylation_rate.py
 
 
merged.fasta
merged.fasta
 
 
merging_fasta_files.py
merging_fasta_files.py
 
 
merging_fasta_files_modified.py
merging_fasta_files_modified.py
 
 
metagenomic.fasta
metagenomic.fasta
 
 
metagenomic_out.fasta
metagenomic_out.fasta
 
 
multi_GC_input.fasta
multi_GC_input.fasta
 
 
multi_fasta.fasta
multi_fasta.fasta
 
 
noname_fastq.fastq
noname_fastq.fastq
 
 
out_file_0.fasta
out_file_0.fasta
 
 
out_file_1.fasta
out_file_1.fasta
 
 
output.fasta
output.fasta
 
 
output_bismark.txt
output_bismark.txt
 
 
pairwise_local_seq_align.ipynb
pairwise_local_seq_align.ipynb
 
 
pairwise_seq_align.ipynb
pairwise_seq_align.ipynb
 
 
parsing_pdb.ipynb
parsing_pdb.ipynb
 
 
pdb1crn.dssp
pdb1crn.dssp
 
 
pdb1crn.ent
pdb1crn.ent
 
 
pdb5h7a.ent
pdb5h7a.ent
 
 
phred_to_Q.py
phred_to_Q.py
 
 
primary_str_from_pdb.fasta
primary_str_from_pdb.fasta
 
 
python_for_bioinformatics.pdf
python_for_bioinformatics.pdf
 
 
query_cover.py
query_cover.py
 
 
query_cover_filter.py
query_cover_filter.py
 
 
read1.py
read1.py
 
 
read2.py
read2.py
 
 
read3.py
read3.py
 
 
reading_fastq.py
reading_fastq.py
 
 
remove_seq.py
remove_seq.py
 
 
renaming_fastq_headers.ipynb
renaming_fastq_headers.ipynb
 
 
rev_comp_multi_fasta.fasta
rev_comp_multi_fasta.fasta
 
 
rev_comp_multi_fasta.py
rev_comp_multi_fasta.py
 
 
rev_complement.py
rev_complement.py
 
 
sample.fastq
sample.fastq
 
 
sample_fastq.fastq
sample_fastq.fastq
 
 
sample_multi_fasta.fasta
sample_multi_fasta.fasta
 
 
seq_from_fasta_using_id_1.py
seq_from_fasta_using_id_1.py
 
 
seq_from_fasta_using_id_2.py
seq_from_fasta_using_id_2.py
 
 
sequence_length_distribution_from_Fastq.ipynb
sequence_length_distribution_from_Fastq.ipynb
 
 
single_GC_input.fasta
single_GC_input.fasta
 
 
total_reads_fastq.py
total_reads_fastq.py
 
 
trie_construction.ipynb
trie_construction.ipynb
 
 
withname_fastq.fastq
withname_fastq.fastq
 
 
write.py
write.py
 
 

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Python-for-Bioinformatics

Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians and biotechnologists while handling biological data especially raw NGS data and for solving problems related to genomics.

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Python for Bioinformatics consist of a variety of python programmes,frequently used by bioinformaticians while handling biological data especially raw NGS data.

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