Move changelog to dedicated file, add more readme badges

CHANGELOG.md

@@ -0,0 +1,188 @@
+# Version 0.7.1
+**2023-11-07**
+
+Bug fixes and better error report
+
+## What's Changed
+- Improve the output of `scopsim.bug_report()` and automatically log that report when an unhandled error occurs: https://github.com/AstarVienna/ScopeSim/pull/287
+- Some bug fixes related to that same bug_report: https://github.com/AstarVienna/ScopeSim/pull/290, https://github.com/AstarVienna/ScopeSim/pull/291
+- Improve ScopeSim's README file: https://github.com/AstarVienna/ScopeSim/pull/294
+- Deal with warnings from the latest Python version 3.12: https://github.com/AstarVienna/ScopeSim/pull/289
+- Internally restructure and clean the test suite, make sure individual tests are not influencing each other: https://github.com/AstarVienna/ScopeSim/pull/285
+
+**Full Changelog**: https://github.com/AstarVienna/ScopeSim/compare/v0.7.0...v0.7.1
+
+# Version 0.7.0
+**2023-10-18**
+
+Off-by-one fix.
+
+## What's Changed
+- Fix a long-standing bug regarding the internal implementation of WCS coordinates, which had multiple consequences, see https://github.com/AstarVienna/ScopeSim/pull/276 for details.
+- This fix might break some existing codes using work-arounds for the bug described above.
+
+**Full Changelog**: https://github.com/AstarVienna/ScopeSim/compare/v0.6.2...v0.7.0
+
+# Version 0.6.2
+**2023-09-14**
+
+Patch with bugfixes and code improvements
+
+## What's Changed
+- Fix documentation on readthedocs.io: https://github.com/AstarVienna/ScopeSim/pull/269
+- Bug fixes related to plotting methods: https://github.com/AstarVienna/ScopeSim/pull/270
+- Formatting of code and documentation to meet community standards: https://github.com/AstarVienna/ScopeSim/pull/271
+- General refactoring, some in preparation of more substantial bug fixes: https://github.com/AstarVienna/ScopeSim/pull/272
+
+**Full Changelog**: https://github.com/AstarVienna/ScopeSim/compare/v0.6.1...v0.6.2
+
+# Version 0.6.1
+**2023-09-06**
+
+Patch with visualisation improvements and general refactoring
+
+## What's Changed
+- Improvements to console representation and plot methods of various classes: https://github.com/AstarVienna/ScopeSim/pull/252 , https://github.com/AstarVienna/ScopeSim/pull/260 , https://github.com/AstarVienna/ScopeSim/pull/263 , https://github.com/AstarVienna/ScopeSim/pull/266
+- Refactoring and changes to the inheritance of some classes: https://github.com/AstarVienna/ScopeSim/pull/261 , https://github.com/AstarVienna/ScopeSim/pull/264 , https://github.com/AstarVienna/ScopeSim/pull/265
+- Changes to the CI configuration to reduce fails caused by web request timeouts https://github.com/AstarVienna/ScopeSim/pull/255 , https://github.com/AstarVienna/ScopeSim/pull/262
+
+**Full Changelog**: https://github.com/AstarVienna/ScopeSim/compare/v0.6.0...v0.6.1
+
+# Version 0.6.0
+**2023-07-10**
+
+Summer 2023
+
+## What's Changed
+- Rename MAORY to MORFEO https://github.com/AstarVienna/ScopeSim/pull/195
+- Fix NCPA and PSF affecting spectroscopy https://github.com/AstarVienna/ScopeSim/pull/238
+- Fix line widths bug https://github.com/AstarVienna/ScopeSim/pull/213
+- Add rectification utilities https://github.com/AstarVienna/ScopeSim/pull/237
+- Include grating efficiencies https://github.com/AstarVienna/ScopeSim/pull/215
+- Improve downloading of IRDB https://github.com/AstarVienna/ScopeSim/pull/234
+- Improve Windows support
+
+## New Contributors
+* @teutoburg made their first contribution in https://github.com/AstarVienna/ScopeSim/pull/216
+
+**Full Changelog**: https://github.com/AstarVienna/ScopeSim/compare/v0.5.6...v0.6.0
+
+# Version 0.5.6
+**2023-03-13**
+
+Hotfix to include minimal set of SVO data
+
+## What's Changed
+- Run notebooks in CI https://github.com/AstarVienna/ScopeSim/pull/183
+- Add SVO data because SVO is down https://github.com/AstarVienna/ScopeSim/pull/185
+- Fix OpticalTrain shared cmds attribute and fix docstring https://github.com/AstarVienna/ScopeSim/pull/186
+
+# Version 0.5.5
+**2023-03-08**
+
+v0.5.5 is the first release by the 2023 A*Vienna team
+
+## What's Changed
+- Return to § for incremental extension keywords https://github.com/AstarVienna/ScopeSim/pull/168
+- thin slit confusing dispersion direction https://github.com/AstarVienna/ScopeSim/pull/169
+- Adds unequal (i.e. 2x1) binning and option to rotate the CCD by integer multiples of 90 degrees https://github.com/AstarVienna/ScopeSim/pull/170
+- add filters and slits to wheels https://github.com/AstarVienna/ScopeSim/pull/176
+- psf_utils.rescale_kernel: fix for negative shifts https://github.com/AstarVienna/ScopeSim/pull/177
+- Fix bug where the ._meta_dicts can become longer than the .fields https://github.com/AstarVienna/ScopeSim/pull/178
+- Add test that Source() is additive identity https://github.com/AstarVienna/ScopeSim/pull/179
+- Allow astropy Units to be values in FITS headers. https://github.com/AstarVienna/ScopeSim/pull/180
+
+# Version 0.5.4
+**2022-10-06**
+
+Hotfix for header keyword generators
+
+## What's Changed
+- incremental special characters for header keywords changed from `§`to `++`
+- source object function calls are now given their own FITS header keyword FNSRCn (function-call source N) due to astropy not liking the combination of HIERARCH and CONTINUE keywords
+
+# Version 0.5.3
+**2022-09-29**
+
+Minor upgrade to Spec modes and to FITS keywords
+
+## What's Changed
+- Effect object ExtraFitsKeywords now has the ability to add keywords with incrementing index numbers based on the extension number
+- FOV + FOVManager + FOVVolumes classes now accept aperture_id as an argument
+- ApertureList effects object now has an apply_to function which splits the FOVVolumeList accordingly
+
+# Version 0.5.2
+**2022-08-25**
+
+Update of DLC server URL to scopesim.univie.ac.at
+
+## What's Changed
+- Updated MANIFEST.in to include all the files needed by the basic_instrument test optical train
+- Small update to allow iterative extension specific FITS header keywords. E.g. EXTNAME = DETn.DATA
+
+# Version 0.5.1
+**2022-07-12**
+
+Update of DLC server URL to scopesim.univie.ac.at
+
+## What's Changed
+  - Changed URL in defaults.yaml file
+
+# Version 0.5.0
+**2022-04-22**
+
+IFU Spectroscopy mode for METIS
+
+## What's Changed
+- The IFU effects for the METIS LMS mode
+- Effects for including extra FITS keywords for the MICADO-ESO delivery
+- Minor change to the OpticalTrain.readout method to allow custom FITS keywords to be added
+- #-strings for accessing the .meta dict contents of Effect objects
+- added the tests.mocks.basic_instrument package for test purposes
+- refactored package downloading functions in server.database
+- Packages can now be downloaded directly from a git commit
+- new RTDs structure for docs based on ipynb files
+- change to SkyCalcTERCurve to use local files to avoid calling the skycalc server
+
+### New Effects:
+- MetisLMSSpectralTraceList(SpectralTraceList)
+- MetisLMSSpectralTrace(SpectralTrace)
+- MetisLMSImageSlicer(ApertureMask)
+- MetisLMSEfficiency(TERCurve)
+- ExtraFitsKeywords(Effect)
+- EffectsMetaKeywords(ExtraFitsKeywords)
+- SourceDescriptionFitsKeywords(ExtraFitsKeywords)
+- SimulationConfigFitsKeywords(ExtraFitsKeywords)
+- SpectralTraceListWheel(Effect)
+- Bias(Effect)
+
+# Version 0.4.1rc1
+**2022-03-25**
+
+Updates since METIS science team release
+
+## What's Changed
+- DetectorList x(y)_size columns now accept units of pixel and mm
+- warnings and errors now handled using python logging package
+- minor bug fixes
+
+### New Effects:
+- TopHatFilterCurve
+- TopHatFilterWheel
+- SpanishVOFilterWheel
+
+# Version 0.4.0
+**2022-03-03**
+
+Version released for the METIS science team
+
+## What's Changed
+- release of new spectroscopy effect SpectalTraceList
+- moved individual spectral trace code to utils file
+- rewritten FovManager class
+- added make_cube, make_image, make_spectrum to FieldOfView class
+- removed fov_grid from Effects
+- added new detector array z_order section (900-class effects)
+- wavelength-dependent PSF in spectroscopic modes
+- proper handling of cube sources
+- headers for output files

README.md

@@ -2,16 +2,17 @@
 ## A telescope observation simulator for Python
 
 [![Build Status](https://github.com/AstarVienna/ScopeSim/actions/workflows/tests.yml/badge.svg)](https://github.com/AstarVienna/ScopeSim/actions/workflows/tests.yml/badge.svg)
-[![Build Status](https://github.com/AstarVienna/ScopeSim/actions/workflows/minimumdependencies.yml/badge.svg)](https://github.com/AstarVienna/ScopeSim/actions/workflows/minimumdependencies.yml/badge.svg)
 [![Build Status](https://github.com/AstarVienna/ScopeSim/actions/workflows/notebooks_with_irdb_download.yml/badge.svg)](https://github.com/AstarVienna/ScopeSim/actions/workflows/notebooks_with_irdb_download.yml/badge.svg)
+[![Poetry](https://img.shields.io/endpoint?url=https://python-poetry.org/badge/v0.json)](https://python-poetry.org/)
+![dev version](https://img.shields.io/badge/dynamic/toml?url=https%3A%2F%2Fraw.githubusercontent.com%2FAstarVienna%2FScopeSim%2Fdev_master%2Fpyproject.toml&query=%24.tool.poetry.version&label=dev%20version&color=teal)
 
 [![Documentation Status](https://readthedocs.org/projects/scopesim/badge/?version=latest)](https://scopesim.readthedocs.io/en/latest)
 [![codecov](https://codecov.io/gh/AstarVienna/ScopeSim/graph/badge.svg)](https://codecov.io/gh/AstarVienna/ScopeSim)
 [![PyPI - Version](https://img.shields.io/pypi/v/ScopeSim)](https://pypi.org/project/ScopeSim/)
-[![Python Version Support](https://github-actions.40ants.com/AstarVienna/DevOps/matrix.svg?only=Tests.build.ubuntu-latest)](https://github.com/AstarVienna/ScopeSim)
+![Python Version Support](https://github-actions.40ants.com/AstarVienna/DevOps/matrix.svg?only=Tests.build.ubuntu-latest)
 
 [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
-
+[![Citation](https://img.shields.io/badge/DOI-10.1117%2F12.2559784-blue)](https://doi.org/10.1117/12.2559784)
 
 ## Summary
 

scopesim/version.py

@@ -1,153 +1,2 @@
 from importlib import metadata
 version = metadata.version(__package__)
-date = '2023-11-07 12:00:00 GMT'
-yaml_descriptions = """
-- version : 0.7.1
-  date : 2023-11-07
-  comment : Bug fixes and better error report
-  changes :
-  - Improve the output of `scopsim.bug_report()` and automatically log that report when an unhandled error occurs: #287
-  - Some bug fixes related to that same bug_report: #290, #291
-  - Improve ScopeSim's README file: #294
-  - Deal with warnings from the latest Python version 3.12: #289
-  - Internally restructure and clean the test suite, make sure individual tests are not influencing each other: #285
-
-- version : 0.7.0
-  date : 2023-10-18
-  comment : Off-by-one fix.
-  changes :
-  - Fix a long-standing bug regarding the internal implementation of WCS coordinates, which had multiple consequences, see #276 for details.
-  - This fix might break some existing codes using work-arounds for the bug described above.
-
-- version : 0.6.2
-  date : 2023-09-14
-  comment : Patch with bugfixes and code improvements
-  changes :
-  - Fix documentation on readthedocs.io: #269
-  - Bug fixes related to plotting methods: #270
-  - Formatting of code and documentation to meet community standards: #271
-  - General refactoring, some in preparation of more substantial bug fixes: #272
-
-- version : 0.6.1
-  date : 2023-09-06
-  comment : Patch with visualisation improvements and general refactoring
-  changes :
-  - Improvements to console representation and plot methods of various classes: #252, #260, #263, #266
-  - Refactoring and changes to the inheritance of some classes: #261, #264, #265
-  - Changes to the CI configuration to reduce fails caused by web request timeouts #255, #262
-
-- version : 0.6.0
-  date : 2023-07-10
-  comment : Summer 2023
-  changes :
-  - Rename MAORY to MORFEO #195
-  - Fix NCPA and PSF affecting spectroscopy #238
-  - Fix line widths bug #213
-  - Add rectification utilities #237
-  - Include grating efficiencies #215
-  - Improve downloading of IRDB #234
-  - Improve Windows support
-
-- version : 0.5.6
-  date : 2023-03-13
-  comment : Hotfix to include minimal set of SVO data
-  changes :
-  - Run notebooks in CI #183
-  - Add SVO data because SVO is down #185
-  - Fix OpticalTrain shared cmds attribute and fix docstring #186
-
-- version : 0.5.5
-  date : 2023-03-08
-  comment : Hotfix for header keyword generators
-  changes :
-  - Return to § for incremental extension keywords #168
-  - thin slit confusing dispersion direction #169
-  - Adds unequal (i.e. 2x1) binning and option to rotate the CCD by integer multiples of 90 degrees #170
-  - add filters and slits to wheels #176
-  - psf_utils.rescale_kernel: fix for negative shifts #177
-  - Fix bug where the ._meta_dicts can become longer than the .fields #178
-  - Add test that Source() is additive identity #179
-  - Allow astropy Units to be values in FITS headers. #180
-
-- version : 0.5.4
-  date : 2022-10-06
-  comment : Hotfix for header keyword generators
-  github_pr_url : https://github.com/AstarVienna/ScopeSim/pull/166
-  changes :
-  - incremental special characters for header keywords changed from `§`to `++`
-  - source object function calls are now given their own FITS header keyword FNSRCn (function-call source N) due to astropy not liking the combination of HIERARCH and CONTINUE keywords
-
-- version : 0.5.3
-  date : 2022-09-29
-  comment : Minor upgrade to Spec modes and to FITS keywords
-  github_pr_url : https://github.com/AstarVienna/ScopeSim/pull/165
-  changes :
-  - Effect object ExtraFitsKeywords now has the ability to add keywords with incrementing index numbers based on the extension number
-  - FOV + FOVManager + FOVVolumes classes now accept aperture_id as an argument
-  - ApertureList effects object now has an apply_to function which splits the FOVVolumeList accordingly
-
-- version : 0.5.2
-  date : 2022-08-25
-  comment : Update of DLC server URL to scopesim.univie.ac.at
-  changes :
-  - Updated MANIFEST.in to include all the files needed by the basic_instrument test optical train
-  - Small update to allow iterative extension specific FITS header keywords. E.g. EXTNAME = DETn.DATA
-
-- version : 0.5.1
-  date : 2022-07-12
-  comment : Update of DLC server URL to scopesim.univie.ac.at
-  changes :
-  - Changed URL in defaults.yaml file
-
-- version : 0.5.0
-  date : 2022-04-22
-  comment : IFU Spectroscopy mode for METIS
-  changes :
-  - The IFU effects for the METIS LMS mode
-  - Effects for including extra FITS keywords for the MICADO-ESO delivery
-  - Minor change to the OpticalTrain.readout method to allow custom FITS keywords to be added
-  - #-strings for accessing the .meta dict contents of Effect objects
-  - added the tests.mocks.basic_instrument package for test purposes
-  - refactored package downloading functions in server.database 
-  - Packages can now be downloaded directly from a git commit 
-  - new RTDs structure for docs based on ipynb files
-  - change to SkyCalcTERCurve to use local files to avoid calling the skycalc server  
-  - New Effects:
-    - MetisLMSSpectralTraceList(SpectralTraceList)
-    - MetisLMSSpectralTrace(SpectralTrace)
-    - MetisLMSImageSlicer(ApertureMask)
-    - MetisLMSEfficiency(TERCurve)
-    - ExtraFitsKeywords(Effect)
-    - EffectsMetaKeywords(ExtraFitsKeywords)
-    - SourceDescriptionFitsKeywords(ExtraFitsKeywords)
-    - SimulationConfigFitsKeywords(ExtraFitsKeywords)
-    - SpectralTraceListWheel(Effect)
-    - Bias(Effect)
-
-- version : 0.4.1rc1
-  date : 2022-03-25
-  comment : Updates since METIS science team release
-  changes :
-  - New Effects:
-    - TopHatFilterCurve   
-    - TopHatFilterWheel   
-    - SpanishVOFilterWheel
-  - DetectorList x(y)_size columns now accept units of pixel and mm
-  - warnings and errors now handled using python logging package
-  - minor bug fixes
-
-- version : 0.4.0
-  date : 2022-03-03
-  comment : Version released for the METIS science team
-  changes :
-  - release of new spectroscopy effect SpectalTraceList
-  - moved individual spectral trace code to utils file
-  - rewritten FovManager class
-  - added make_cube, make_image, make_spectrum to FieldOfView class
-  - removed fov_grid from Effects
-  - added new detector array z_order section (900-class effects)
-  - wavelength-dependent PSF in spectroscopic modes
-  - proper handling of cube sources
-  - headers for output files
-
-"""