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AstraZeneca - NGS Team

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VarDict VarDict Public

VarDict

Perl 186 61
VarDictJava VarDictJava Public

VarDict Java port

Java 127 55
disambiguate disambiguate Public

Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem

C++ 28 15
simple_sv_annotation simple_sv_annotation Public

Simplify snpEff annotations for interesting cases

Python 21 4
Seq2C Seq2C Public

Perl 4 5

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Showing 10 of 15 repositories

Seq2C Public

AstraZeneca-NGS/Seq2C’s past year of commit activity

Perl 4 MIT 5 2 0 Updated Jan 11, 2024
VarDict Public
VarDict

AstraZeneca-NGS/VarDict’s past year of commit activity

Perl 186 MIT 61 36 1 Updated Jan 5, 2024
VarDictJava Public
VarDict Java port

AstraZeneca-NGS/VarDictJava’s past year of commit activity

Java 127 MIT 55 61 3 Updated Jan 5, 2024
rnaseq-nf Public Forked from nextflow-io/rnaseq-nf

AstraZeneca-NGS/rnaseq-nf’s past year of commit activity

Nextflow 0 MPL-2.0 100 0 0 Updated Dec 3, 2023
ichorCNA Public Forked from GavinHaLab/ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

AstraZeneca-NGS/ichorCNA’s past year of commit activity

R 0 GPL-3.0 89 0 0 Updated Aug 30, 2023
MultiQC Public Forked from MultiQC/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.

AstraZeneca-NGS/MultiQC’s past year of commit activity

Python 3 GPL-3.0 594 0 0 Updated Jul 6, 2023
TargQC Public Forked from vladsavelyev/TargQC
Alignment coverage analysis tool

AstraZeneca-NGS/TargQC’s past year of commit activity

HTML 0 GPL-3.0 1 0 0 Updated Sep 11, 2019
simple_sv_annotation Public
Simplify snpEff annotations for interesting cases

AstraZeneca-NGS/simple_sv_annotation’s past year of commit activity

Python 21 4 1 0 Updated Feb 18, 2019
NGS_Utils Public Forked from vladsavelyev/NGS_Utils
Utility functions for bioinformatics projects

AstraZeneca-NGS/NGS_Utils’s past year of commit activity

JavaScript 0 3 0 0 Updated May 21, 2018
disambiguate Public
Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem

AstraZeneca-NGS/disambiguate’s past year of commit activity

C++ 28 MIT 15 7 0 Updated May 8, 2018

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