work log june
Atemia edited this page Jun 27, 2022
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3 revisions
- Reorganization of the documentation repository- linked it on my private Github
- Prepared individual species genotype data for GWAS
- Prepared individual species phenotype data for GWAS
- Organize and documentation scripts for genetic diversity analyses
- Inspect currently running GWAS analysis runs on whole datasets
- GWAS software installations on the server
- server
/mnt/data/joseph/GWAS/
- Teosinte project
- Inspect the GWAS results with the overall data
- GAPIT software installations on the server and running individual species GWAS on selected phenotype trait
- Sofware (GAPIT-R package) installations on the server
- Run Mexicana GWAS on weight 100 kernels
- server
/mnt/data/joseph/GWAS/
- Teosinte project
- Run GWAS on other species for weight 100 kernels
- Compare the results
- Optimize the approach for other phenotypes
- Inspect Mexicana GWAS results
- Write and run scripts for the other GWAS species
- server
/mnt/data/joseph/GWAS/
- Teosinte project
- Optimize the approach for other phenotypes
- Improve the analysis based on the GWAS runs so far