this respositories contain datasets and script used for Emu-gut_microbiome project
analysis.R : code for analysis in R v4.2.0 (package version were annotated in code)
count_file.txt : microbiota reads count matrix create by metaphlan3.1.0
pathway_file.tsv : pathway count matrix (normalized by cpm) creat by humann2
sample_file.txt group information
tax_file.txt taxon file for count_file.txt
ab.species.level.txt : microbiota relative abundance matrix (species level)
count.phylum.stat.txt : microbiota summary of phylum level