bbmri-export

Patient information

Attribute	Attribute Format
patient_id	integer
birth_date	ISO_8601
sex	male/female/unknown
status	alive/deceased/unknown
consent	boolean
consent_sign_date	ISO_8601
consent_retraction_date	ISO_8601
country_of_residence	ISO_3166-3

Specimen information

• There are 5 tipes of specimen
  • Tissue, Serum, Genome, DiagnosisMaterial, Blood

Elements of each specimen

Shared elements

• SampleID
• BiopsyID
• PredictiveID
• TakingDate (Date - ISO 8601)
• Diagnosis (ICD-10)
• Retrieved (preop, op, postop, unknown)

Specific additional elements for Tissue

• MaterialType
• TNM (TNM-7)
• pTNM (TNM-7)
• Topography (ICD-O-3)
• morphology (ICD-O-3)
• grading (SNOMED CT 373372005-family tree)
• cutTime (Date and time ISO 8601)
• freezeTime (Date and time ISO 8601)