Merge pull request #170 from BBN-Q/fix/setup

First pass at python deps in setup.py

README.md

@@ -26,16 +26,24 @@ pip install watchdog
 ### Python 3.4+
 
 ```bash
-conda install future
-pip install watchdog
 conda install -c ecpy atom
+cd QGL/
+pip install .
 ```
 
 For Python 3.6+ you may need to install watchdog from conda forge:
 ```
 conda install -c conda-forge watchdog
+conda install -c ecpy atom
+cd QGL/
+pip install .
 ```
 
+If you'd like to use some of the built-in gate-set-tomography functionality,
+you can grab the PyGSTi package during the install:
+```
+pip install '.[gst]'
+```
 If the `QGL` module is not installed, the repository path needs to be in the
 `PYTHONPATH`. On Windows machines, you add/modify this environment variable by
 going to System -> Advanced Settings -> Environment variables. On Mac/Linux

setup.py

@@ -3,4 +3,17 @@
 setup(name='QGL',
       version='2.1',
       url='https://github.com/BBN-Q/QGL',
-      packages=find_packages(exclude=["tests"]))
+      packages=find_packages(exclude=["tests"]),
+      install_requires=[
+            "numpy >= 1.11.1",
+            "scipy >= 0.17.1",
+            "jupyter >= 1.0.0",
+            "atom >= 0.4.1",
+            "h5py >= 2.6.0",
+            "networkx >= 1.11",
+            "future >= 0.16",
+            "watchdog >= 0.8.3",
+            "bokeh >= 0.11"
+      ],
+      extras_require={"gst": "pygsti>0.9.4"}
+)