Skip to content

v2.0.0
Compare
Choose a tag to compare
@j3551ca j3551ca released this 19 Oct 01:30
· 27 commits to main since this release
v2.0.0
49a5dc1
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

  • Resolve cvxpy.error.SolverError with update to Freyja v1.4.7 that groups sublineages if insufficient read depth covering lineage differentiating mutations. This adds the Freyja --depthcutoff option which is not present in older versions and would cause an error.
    4c09101

  • Handle negative control samples (only samples with "neg" substring - still fails otherwise) that are empty and would previously cause the pipeline to terminate after the Freyja demix command is unable to make lineage calls.

  • Renaming options and reformatting outputs

Assets 2
Loading