pyscenic does not contain genesig

[rekado]

The latest release of pySCENIC no longer provides pyscenic.genesig:

aertslab/pySCENIC@a137cd1

This has moved to ctxcore.

[rekado]

FWIW I added python-ikarus to Guix with commit 81cf674a5d5e3dc020df5d43ce62e1c98f2c9711. The package includes a fix for this issue.

[erevkov]

Hi! I wanted to try using the package, but after installing I ran into the same error: ModuleNotFoundError: No module named 'pyscenic.genesig' (Python 3.8, installed with pip+git in a conda environment). Will there be a fix anytime soon, or perhaps there is a fixed version available elsewhere already?

[rekado]

@erevkov in the meantime you can patch this by replacing "pyscenic.genesig" with "ctxcore.genesig" in ikarus/classifier.py.

[dohmjan]

Hi! Thank you for the hint, it's now also changed in the repo.

[melonheader]

@erevkov Could you tell if the model works for you after the update?

[erevkov]

Yep, looks like this is working now, thanks!