BCD: Error during Reading in external files

[Qasim-Latrobe]

Who is the bug affecting?

The BCD doesn't run.

What is affected by this bug?

The error doesn't allow BCD to run at all.

When does this occur?

Whenever I try to run BCD.

Where on the platform does it happen?

Ubuntu command line.

How do we replicate the issue?

1. Install Ubuntu shell on windows 10.
2. Build BRAINSTools as described by Readme Document.
3. Run BCD as bash for re-aligning MRI anatomical image.

Expected behavior (i.e. solution)

The program should create a re-aligned image file.

The Error Log is given below:

Reading in external files...
HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 0:
#000: /mnt/c/Users/19830112/downloads/build/ITKv5/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5F.c line 509 in itk_H5Fopen(): unable to open file
major: File accessibilty
minor: Unable to open file
#1: /mnt/c/Users/19830112/downloads/build/ITKv5/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Fint.c line 1400 in itk_H5F__open(): unable to open file
major: File accessibilty
minor: Unable to open file
#2: /mnt/c/Users/19830112/downloads/build/ITKv5/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Fint.c line 1546 in itk_H5F_open(): unable to open file: time = Wed Dec 18 11:53:38 2019
, name = '/mnt/c/Users/19830112/downloads/build/BRAINSTools-Release-EPRelease-build/bin/LLSModel.h5', tent_flags = 0
major: File accessibilty
minor: Unable to open file
#3: /mnt/c/Users/19830112/downloads/build/ITKv5/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FD.c line 734 in itk_H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#4: /mnt/c/Users/19830112/downloads/build/ITKv5/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDsec2.c line 346 in H5FD_sec2_open(): unable to open file: name = '/mnt/c/Users/19830112/downloads/build/BRAINSTools-Release-EPRelease-build/bin/LLSModel.h5', errno = 2, error message = 'No such file or directory', flags = 0, o_flags = 0
major: File accessibilty
minor: Unable to open file
HDF5-DIAG: Error detected in HDF5 (1.10.4) thread 0:
#000: /mnt/c/Users/19830112/downloads/build/ITKv5/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5F.c line 509 in itk_H5Fopen(): unable to open file
major: File accessibilty
minor: Unable to open file
#1: /mnt/c/Users/19830112/downloads/build/ITKv5/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Fint.c line 1400 in itk_H5F__open(): unable to open file
major: File accessibilty
minor: Unable to open file
#2: /mnt/c/Users/19830112/downloads/build/ITKv5/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5Fint.c line 1546 in itk_H5F_open(): unable to open file: time = Wed Dec 18 11:53:38 2019
, name = '/mnt/c/Users/19830112/downloads/build/BRAINSTools-Release-EPRelease-build/bin/LLSModel.h5', tent_flags = 0
major: File accessibilty
minor: Unable to open file
#3: /mnt/c/Users/19830112/downloads/build/ITKv5/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FD.c line 734 in itk_H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#4: /mnt/c/Users/19830112/downloads/build/ITKv5/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5FDsec2.c line 346 in H5FD_sec2_open(): unable to open file: name = '/mnt/c/Users/19830112/downloads/build/BRAINSTools-Release-EPRelease-build/bin/LLSModel.h5', errno = 2, error message = 'No such file or directory', flags = 0, o_flags = 0
major: File accessibilty
minor: Unable to open file
Error reading LLS Model

[hjmjohnson]

BCD has undergone significant fixes and easier installation over the past few months. Please retry.