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make error : get_property could not find TARGET zlib. Perhaps it has not yet been created. #98

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AleksDark opened this issue Jun 17, 2014 · 5 comments
Closed

make error : get_property could not find TARGET zlib. Perhaps it has not yet been created. #98

AleksDark opened this issue Jun 17, 2014 · 5 comments
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@Chaircrusher

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@AleksDark
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Suggestions?
Debian system, first time to build complete version of BRAINSTools.
Error message:

-- SuperBuild - BRAINSTools => Requires DCMTK, ITKv4, SlicerExecutionModel, teem, Boost, ReferenceAtlas, VTK, OpenCV, ANTs, PCRE, Swig, SimpleITK, NIPYPE,
-- SuperBuild - First pass
-- SuperBuild - First pass - done
CMake Error at /usr/share/cmake-2.8/Modules/ExternalProject.cmake:642 (get_property):
get_property could not find TARGET zlib. Perhaps it has not yet been
created.
Call Stack (most recent call first):
/usr/share/cmake-2.8/Modules/ExternalProject.cmake:856 (ExternalProject_Get_Property)
/usr/share/cmake-2.8/Modules/ExternalProject.cmake:1331 (_ep_get_step_stampfile)
/usr/share/cmake-2.8/Modules/ExternalProject.cmake:1545 (_ep_add_configure_command)
/media/Software/Slicer/Slicer/CMake/ExternalProjectDependency.cmake:668 (ExternalProject_Add)
/media/Software/Slicer/Slicer/SuperBuild/External_DCMTK.cmake:68 (ExternalProject_Add_Empty)
/media/Software/Slicer/Slicer-Quick-test/BRAINSTools/CMake/SlicerMacroCheckExternalProjectDependency.cmake:69 (include)
/media/Software/Slicer/Slicer-Quick-test/BRAINSTools/SuperBuild.cmake:246 (SlicerMacroCheckExternalProjectDependency)
/media/Software/Slicer/Slicer-Quick-test/BRAINSTools/CMakeLists.txt:30 (include)

CMake Error at /usr/share/cmake-2.8/Modules/ExternalProject.cmake:644 (message):
External project "zlib" has no stamp_dir
Call Stack (most recent call first):
/usr/share/cmake-2.8/Modules/ExternalProject.cmake:856 (ExternalProject_Get_Property)
/usr/share/cmake-2.8/Modules/ExternalProject.cmake:1331 (_ep_get_step_stampfile)
/usr/share/cmake-2.8/Modules/ExternalProject.cmake:1545 (_ep_add_configure_command)
/media/Software/Slicer/Slicer/CMake/ExternalProjectDependency.cmake:668 (ExternalProject_Add)
/media/Software/Slicer/Slicer/SuperBuild/External_DCMTK.cmake:68 (ExternalProject_Add_Empty)
/media/Software/Slicer/Slicer-Quick-test/BRAINSTools/CMake/SlicerMacroCheckExternalProjectDependency.cmake:69 (include)
/media/Software/Slicer/Slicer-Quick-test/BRAINSTools/SuperBuild.cmake:246 (SlicerMacroCheckExternalProjectDependency)
/media/Software/Slicer/Slicer-Quick-test/BRAINSTools/CMakeLists.txt:30 (include)

-- Configuring incomplete, errors occurred!
make[2]: *** [Slicer-prefix/src/Slicer-stamp/Slicer-configure] Error 1
make[1]: *** [CMakeFiles/Slicer.dir/all] Error 2
make: *** [all] Error 2
@AleksDark
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Manual build produces this error:

error: pathspec 'EnhanceQSubProcessing' did not match any file(s) known to git.
CMake Error at /media/Software/Slicer/Slicer-Quick-test/Slicer-build/Modules/Remote/BRAINSTools/NIPYPE-prefix/tmp/NIPYPE-gitclone.cmake:39 (message):
Failed to checkout tag: 'EnhanceQSubProcessing'

make[2]: *** [NIPYPE-prefix/src/NIPYPE-stamp/NIPYPE-download] Error 1
make[1]: *** [CMakeFiles/NIPYPE.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
make: *** [all] Error 2

@Chaircrusher
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I¹d try configuring with USE_SYSTEM_ZLIB=ON

We don¹t have Debian systems AFAIK but we do build on Linux all the time.

From: AleksDark notifications@github.com
Reply-To: BRAINSia/BRAINSTools
<reply+i-35879405-3633f15ab3bf8503a7b74ef357806423502a4a95-482621@reply.git
hub.com>
Date: Tuesday, June 17, 2014 at 6:20 AM
To: BRAINSia/BRAINSTools BRAINSTools@noreply.github.com
Subject: [BRAINSTools] make error : get_property could not find TARGET
zlib. Perhaps it has not yet been created. (#98)

Suggestions?
Debian system, first time to build complete version of BRAINSTools.
Error message:
-- SuperBuild - BRAINSTools => Requires DCMTK, ITKv4,
SlicerExecutionModel, teem, Boost, ReferenceAtlas, VTK, OpenCV, ANTs,
PCRE, Swig, SimpleITK, NIPYPE,

-- SuperBuild - First pass
-- SuperBuild - First pass - done
CMake Error at /usr/share/cmake-2.8/Modules/ExternalProject.cmake:642
(get_property):
get_property could not find TARGET zlib. Perhaps it has not yet been
created.
Call Stack (most recent call first):
/usr/share/cmake-2.8/Modules/ExternalProject.cmake:856
(ExternalProject_Get_Property)
/usr/share/cmake-2.8/Modules/ExternalProject.cmake:1331
(_ep_get_step_stampfile)
/usr/share/cmake-2.8/Modules/ExternalProject.cmake:1545
(_ep_add_configure_command)
/media/Software/Slicer/Slicer/CMake/ExternalProjectDependency.cmake:668
(ExternalProject_Add)
/media/Software/Slicer/Slicer/SuperBuild/External_DCMTK.cmake:68
(ExternalProject_Add_Empty)
/media/Software/Slicer/Slicer-Quick-test/BRAINSTools/CMake/SlicerMacroCheck
ExternalProjectDependency.cmake:69 (include)
/media/Software/Slicer/Slicer-Quick-test/BRAINSTools/SuperBuild.cmake:246
(SlicerMacroCheckExternalProjectDependency)
/media/Software/Slicer/Slicer-Quick-test/BRAINSTools/CMakeLists.txt:30
(include)
CMake Error at /usr/share/cmake-2.8/Modules/ExternalProject.cmake:644
(message):
External project "zlib" has no stamp_dir
Call Stack (most recent call first):
/usr/share/cmake-2.8/Modules/ExternalProject.cmake:856
(ExternalProject_Get_Property)
/usr/share/cmake-2.8/Modules/ExternalProject.cmake:1331
(_ep_get_step_stampfile)
/usr/share/cmake-2.8/Modules/ExternalProject.cmake:1545
(_ep_add_configure_command)
/media/Software/Slicer/Slicer/CMake/ExternalProjectDependency.cmake:668
(ExternalProject_Add)
/media/Software/Slicer/Slicer/SuperBuild/External_DCMTK.cmake:68
(ExternalProject_Add_Empty)
/media/Software/Slicer/Slicer-Quick-test/BRAINSTools/CMake/SlicerMacroCheck
ExternalProjectDependency.cmake:69 (include)
/media/Software/Slicer/Slicer-Quick-test/BRAINSTools/SuperBuild.cmake:246
(SlicerMacroCheckExternalProjectDependency)
/media/Software/Slicer/Slicer-Quick-test/BRAINSTools/CMakeLists.txt:30
(include)
-- Configuring incomplete, errors occurred!
make[2]: *** [Slicer-prefix/src/Slicer-stamp/Slicer-configure] Error 1
make[1]: *** [CMakeFiles/Slicer.dir/all] Error 2
make: *** [all] Error 2
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@AleksDark
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Hi,
Can you specify how to?

Command
cmake ../BRAINSTools -DUSE_SYSTEM_ZLIB=ON
Produces at the end:

CMake Warning:
Manually-specified variables were not used by the project:
USE_SYSTEM_ZLIB

@hjmjohnson
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That build feature is not yet operational.

We are working to make it better.

Sent from my iPhone

On Jun 19, 2014, at 2:41 AM, AleksDark notifications@github.com wrote:

Hi,
Can you specify how to?

Command
cmake ../BRAINSTools -DUSE_SYSTEM_ZLIB=ON
Produces at the end:

CMake Warning:
Manually-specified variables were not used by the project:
USE_SYSTEM_ZLIB

—
Reply to this email directly or view it on GitHub.

@Chaircrusher
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Fixed in 381b9f9

Illustrates the danger of global declarations in headers -- I just deleted them all out of BRAINSFitUtilities.h and it turns out that some of the places I subsequently had to fix had nothing to do with BRAINSFit functions in BRAINSCommonLib. The fact that BRAINSFitUtilities.h was included by some accident of nested includes was the only reason the code compiled.

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@hjmjohnson @Chaircrusher @AleksDark