Update for new Options button on main panel in 3.3.4

MainPanel.rst

@@ -95,7 +95,7 @@ No Filter     Highlight     Hide
 2) Filter Section
 -----------------
 
-.. image:: images/main_panel/filter_section2.png
+.. image:: images/main_panel/filter_section3.png
    :width: 40%
    :align: right
 
@@ -124,15 +124,22 @@ The filter section is used to hide nodes and edges in the network.
   * Initially the checkbox next to each data set is selected.
   * De-selecting the checkboxes hides gene set nodes that are only contained in those data sets.
 
-* Change colors
+* Options button: Opens a pop-up menu with options for working with Data Sets.
 
-  * Opens a color chooser pop-up for choosing the colors used for each data set. This will change
-    the color of the network edges, colors of the 'Color by Data Set' chart, and the table header in the
-    Heat Map panel.
+  * Change data set colors
 
-* Add Signature Gene Sets button
+    * Opens a color chooser pop-up for choosing the colors used for each data set. This will change
+      the color of the network edges, colors of the 'Color by Data Set' chart, and the table header in the
+      Heat Map panel.
 
-  * Click to open the :ref:`post_analysis` dialog.
+  * Add Signature Gene Sets
+
+    * Opens the :ref:`post_analysis` dialog.
+
+  * Highlight data sets for selected nodes and edges
+
+    * When selecting nodes or edges in the network the corresponding data sets will be highlighted. This makes
+      it easy to know data set membership. Select this option to turn this feature on/off.
 
 The number of hidden nodes and edges can be seen in the status bar under the network view.
 

PostAnalysis.rst

@@ -8,11 +8,11 @@ The **Add Signature Gene Sets** panel allows you to add more gene sets to an exi
 This is done by calculating the overlap between gene sets of the current EnrichmentMap network 
 and all the gene sets contained in the provided signature gene set file.
 
-To open the *Add Signature Gene Sets Dialog* click the **Add Signature Gene Sets...** 
-button on the main panel.
+To open the *Add Signature Gene Sets Dialog* click the **Options** button on the main panel
+and select **Add Signature Gene Sets...**
 
-.. image:: images/pa/pa_button.png
-   :width: 40%
+.. image:: images/pa/pa_button2.png
+   :width: 85%
 
 The result of running Post Analysis is a new node for each signature gene set (yellow triangle) 
 and edges from the signature gene set to each existing gene set when the similarity passes the 

QuickTour.rst

@@ -94,7 +94,7 @@ Main EnrichmentMap Panel
 
 The Main EnrichmentMap Panel can be used to customize the network in several ways.
 
-.. image:: images/quicktour/main_panel2.png
+.. image:: images/quicktour/main_panel3.png
    :width: 40%
    :align: right
 
@@ -104,11 +104,13 @@ The Main EnrichmentMap Panel can be used to customize the network in several way
     are hidden from view.
   * **Edge cutoff slider**: Edges with a similarity score that does not pass the cutoff
     are hidden from view.
-  * **Data set list**: Lists Data Sets that were used to create the network. De-selecting
+  * **Data Set list**: Lists Data Sets that were used to create the network. De-selecting
     the checkbox next to the name of a data set causes gene set nodes that are not
     contained in the data set to be hidden from view.
-  * **Add signature gene sets button**: Opens the Post Analysis dialog which is used 
-    to add more gene sets to the network.
+  * **Options button**: Contains options for working with the data set list.
+
+    * **Add signature gene sets menu option**: Opens the Post Analysis dialog which is used 
+      to add more gene sets to the network.
 
 * Style section
 
@@ -165,10 +167,11 @@ Post Analysis (Add Signature Gene Sets)
 The **Add Signature Gene Sets** panel allows you to add more gene sets to an existing network. This is
 also called **Post Analysis**.
 
-To access the dialog click the **Add Signature Gene Sets...** button on the Main EnrichmentMap panel.
+To access the dialog click the **Options** button at the top right of the Data Set List,
+then select **Add Signature Gene Sets...** in the pop-up menu.
 
-.. image:: images/quicktour/main_panel_pa_button.png
-   :width: 45%
+.. image:: images/quicktour/main_panel_pa_button2.png
+   :width: 80%
 
 The dialog allows gene set (GMT) files to be loaded from the local file system or downloaded
 from the web.