What's new for 3.1

WhatsNew.rst

@@ -0,0 +1,40 @@
+What's New
+==========
+
+EnrichmentMap 3.1
+-----------------
+
+* Redesigned Post-Analysis UI
+
+  * Ability to preview signature gene sets before import
+  * Ability to import GMT files from the web (download.baderlab.org)
+
+* New Chart: Color by DataSet.
+* Support for `g:profiler` 2-phenotype analysis.
+* Heat Map: Compress expressions by class.
+* Export Legend to PDF.
+* Export Heat Map to PDF.
+* Ability to specify the name of the EnrichmentMap network.
+* Drag-and-Drop folders onto the Create EnrichmentMap Dialog.
+* `Several bug fixes <https://github.com/BaderLab/EnrichmentMapApp/milestone/7?closed=1>`_
+* Requires Cytoscape 3.5.1
+
+
+EnrichmentMap 3.0
+-----------------
+
+EnrichmentMap 3.0 is a major release, with the following new features:
+
+* EnrichmentMap networks can now be created from any number of enrichment data sets 
+  (EnrichmentMap 2.0 supported maximum 2 data sets).
+* New chart visualizations on nodes for visualizing NES scores, p-values or q-values. 
+  Three new charts are available: radial heat-map, linear heat-map and heat-strips.
+* New network creation dialog has the ability to scan a folder for files belonging to each dataset. 
+  In most cases this removes the need to manually enter the required files.
+* New control panel allows the contents and style of the network and charts to be updated 
+  dynamically.
+* New legend dialog.
+* New streamlined HeatMap panel has the ability to summarize expression data.
+* Several new commands that allow EnrichmentMap to be automated from external scripts and CyREST.
+* `Several bug fixes <https://github.com/BaderLab/EnrichmentMapApp/milestone/6?closed=1>`_
+* Requires Cytoscape 3.4

index.rst

@@ -100,6 +100,7 @@ Papers Citing Enrichment Map
    :caption: User Guide:
 
    Installation
+   WhatsNew
    QuickTour
    CreatingNetwork
    Network