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3D Graph Matching to identify SSEs Correspondence of Cryo-EM maps

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10 Commits
1BZ4_Stick_hlces.csv
1BZ4_Stick_hlces.csv
 
 
1BZ4_Topology_hlces.csv
1BZ4_Topology_hlces.csv
 
 
1FLP_Stick_hlces.csv
1FLP_Stick_hlces.csv
 
 
1FLP_Topology_helices.csv
1FLP_Topology_helices.csv
 
 
1HG5_Stick_hlces.csv
1HG5_Stick_hlces.csv
 
 
1HG5_Topology_hlces.csv
1HG5_Topology_hlces.csv
 
 
1ICX_Topology_hlces.csv
1ICX_Topology_hlces.csv
 
 
1ICX_Topology_strands.csv
1ICX_Topology_strands.csv
 
 
1ICX_stick_hlces.csv
1ICX_stick_hlces.csv
 
 
1ICX_stick_strands.csv
1ICX_stick_strands.csv
 
 
1NG6_Stick_hlces.csv
1NG6_Stick_hlces.csv
 
 
1NG6_Topology_helices.csv
1NG6_Topology_helices.csv
 
 
1P5X_Stick_hlces.csv
1P5X_Stick_hlces.csv
 
 
1P5X_Topology_hlces.csv
1P5X_Topology_hlces.csv
 
 
1XQO_Stick_hlces.csv
1XQO_Stick_hlces.csv
 
 
1XQO_Topology_hlces.csv
1XQO_Topology_hlces.csv
 
 
2XB5_Stick_hlces.csv
2XB5_Stick_hlces.csv
 
 
2XB5_Topology_helices.csv
2XB5_Topology_helices.csv
 
 
2XVV_Stick_hlces.csv
2XVV_Stick_hlces.csv
 
 
2XVV_Topology_hlces.csv
2XVV_Topology_hlces.csv
 
 
2Y4Z_Topology_hlces.csv
2Y4Z_Topology_hlces.csv
 
 
2Y4Z_Topology_strands.csv
2Y4Z_Topology_strands.csv
 
 
2Y4Z_stick_hlces.csv
2Y4Z_stick_hlces.csv
 
 
2Y4Z_stick_strands.csv
2Y4Z_stick_strands.csv
 
 
3ACW_Stick_hlces.csv
3ACW_Stick_hlces.csv
 
 
3ACW_Topology_helices.csv
3ACW_Topology_helices.csv
 
 
3C91_Topology_helices.csv
3C91_Topology_helices.csv
 
 
3C91_Topology_strands.csv
3C91_Topology_strands.csv
 
 
3C91_sticks_hlces.csv
3C91_sticks_hlces.csv
 
 
3C91_sticks_strands.csv
3C91_sticks_strands.csv
 
 
3FIN_Topology_helices.csv
3FIN_Topology_helices.csv
 
 
3FIN_Topology_strands.csv
3FIN_Topology_strands.csv
 
 
3FIN_sticks_hlces.csv
3FIN_sticks_hlces.csv
 
 
3FIN_sticks_strands.csv
3FIN_sticks_strands.csv
 
 
3HBE_Stick_hlces.csv
3HBE_Stick_hlces.csv
 
 
3HBE_Topology_hlces.csv
3HBE_Topology_hlces.csv
 
 
3HJL_Stick_hlces.csv
3HJL_Stick_hlces.csv
 
 
3HJL_Topology_hlces.csv
3HJL_Topology_hlces.csv
 
 
3LTJ_Stick_hlces.csv
3LTJ_Stick_hlces.csv
 
 
3LTJ_Topology_hlces.csv
3LTJ_Topology_hlces.csv
 
 
3ODS_Stick_hlces.csv
3ODS_Stick_hlces.csv
 
 
3ODS_Topology_helices.csv
3ODS_Topology_helices.csv
 
 
4CHV_Topology_helices.csv
4CHV_Topology_helices.csv
 
 
4CHV_Topology_strands.csv
4CHV_Topology_strands.csv
 
 
4CHV_sticks_hlces.csv
4CHV_sticks_hlces.csv
 
 
4CHV_sticks_strands.csv
4CHV_sticks_strands.csv
 
 
5I1M_Stick_hlces.csv
5I1M_Stick_hlces.csv
 
 
5I1M_Topology_hlces.csv
5I1M_Topology_hlces.csv
 
 
5KBU_Topology_helices.csv
5KBU_Topology_helices.csv
 
 
5KBU_Topology_strands.csv
5KBU_Topology_strands.csv
 
 
5KBU_sticks_hlces.csv
5KBU_sticks_hlces.csv
 
 
5KBU_sticks_strands.csv
5KBU_sticks_strands.csv
 
 
5O8O_Topology_helices.csv
5O8O_Topology_helices.csv
 
 
5O8O_Topology_strands.csv
5O8O_Topology_strands.csv
 
 
5O8O_sticks_hlces.csv
5O8O_sticks_hlces.csv
 
 
5O8O_sticks_strands.csv
5O8O_sticks_strands.csv
 
 
5UZB_Topology_helices.csv
5UZB_Topology_helices.csv
 
 
5UZB_Topology_strands.csv
5UZB_Topology_strands.csv
 
 
5uzb_sticks_hlces.csv
5uzb_sticks_hlces.csv
 
 
5uzb_sticks_strands.csv
5uzb_sticks_strands.csv
 
 
6EM3_Topology_helices.csv
6EM3_Topology_helices.csv
 
 
6EM3_Topology_strands.csv
6EM3_Topology_strands.csv
 
 
6EM3_sticks_hlces.csv
6EM3_sticks_hlces.csv
 
 
6EM3_sticks_strands.csv
6EM3_sticks_strands.csv
 
 
6F36_Stick_hlces.csv
6F36_Stick_hlces.csv
 
 
6F36_Topology_hlces.csv
6F36_Topology_hlces.csv
 
 
6UXW_Topology_helices.csv
6UXW_Topology_helices.csv
 
 
6UXW_Topology_strands.csv
6UXW_Topology_strands.csv
 
 
6UXW_sticks_hlces.csv
6UXW_sticks_hlces.csv
 
 
6UXW_sticks_strands.csv
6UXW_sticks_strands.csv
 
 
Adjust_index.m
Adjust_index.m
 
 
Adjust_index_RVA.m
Adjust_index_RVA.m
 
 
Compute_Accuracy.m
Compute_Accuracy.m
 
 
DBSCAN_main.m
DBSCAN_main.m
 
 
DScale.m
DScale.m
 
 
Fmean.m
Fmean.m
 
 
Fmean2.m
Fmean2.m
 
 
MAC_Vote3_Vote2_PLC.m
MAC_Vote3_Vote2_PLC.m
 
 
Mdbscan.m
Mdbscan.m
 
 
Normalize_Fcn.m
Normalize_Fcn.m
 
 
Plot_Beam.m
Plot_Beam.m
 
 
Principle_least_conflict_1.m
Principle_least_conflict_1.m
 
 
ProduceMatrix.m
ProduceMatrix.m
 
 
README.md
README.md
 
 
ReScale.m
ReScale.m
 
 
Topology_5KBU_helices.csv
Topology_5KBU_helices.csv
 
 
Topology_5KBU_strands.csv
Topology_5KBU_strands.csv
 
 
accuracy.m
accuracy.m
 
 
adjrand.m
adjrand.m
 
 
bhattacharyya.m
bhattacharyya.m
 
 
bhattacharyya_Vote3_Vote2_PLC.m
bhattacharyya_Vote3_Vote2_PLC.m
 
 
compare_result_length.m
compare_result_length.m
 
 
compute_Euclidean_bhattacharyya.m
compute_Euclidean_bhattacharyya.m
 
 
compute_Euclidean_mac.m
compute_Euclidean_mac.m
 
 
compute_Length_match.m
compute_Length_match.m
 
 
compute_angle_bhattacharyya.m
compute_angle_bhattacharyya.m
 
 
compute_angle_mac.m
compute_angle_mac.m
 
 
compute_deltaLength_bhattacharyya.m
compute_deltaLength_bhattacharyya.m
 
 
compute_deltaLength_mac.m
compute_deltaLength_mac.m
 
 
compute_insert_helix_conflict.m
compute_insert_helix_conflict.m
 
 

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Match_SSEs_CryoEM

To run the program: 1- Install the Matlab 2020. 2- Invoke the main.m script located in the root of the project. 3- Enter the ID of the protein in line 20 . 4- Run the program.

3D Graph Matching to identify SSEs Correspondence of Cryo-EM maps

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3D Graph Matching to identify SSEs Correspondence of Cryo-EM maps

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