Two Fingerprinting Sets for Humulus lupulus Based on KASP and Microsatellite Markers
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The files in this github repository are associated with the manuscirpt "Two Fingerprinting Sets for Humulus lupulus Based on KASP and Microsatellite Markers" by Mandie Driskill, Katie Pardee, Kim E. Hummer, Jason D. Zurn, Keenan Amundsen, Annette Wiles, Claudia Wiedow, Josef Patzak, John A. Henning, and Nahla V. Bassil
Descriptions of the files in this repository follow:
R_Code: This file contains all of the raw genotype files and R code used to identify clusters, create dendrograms, and perform PCoA in the bi-parental populations, the 629 samples, and the 190 samples shared between 9-SSR and 25 KASP SNP assays.
Python_Code: This file contains all of the python code used to create the genepop file.