SulciLab is a web based application for shared brain sulci labelling.
### Sulcilab The labelization database manager itself.
A simple PyQT application to open Brainvisa labelization tools using th eSulcilab framework.
A ReactJS web frontend to connect to the Sulcilab database and labelize graphs online.
git clone https://github.com/BastienCagna/sulcilab_frontend.git
./setup.sh
# Start the backend
uvicorn sulcilab.main:app --reload
# Compile SCSS files (or use sass watcher in your IDE)
sass --watch sass:css
# Start the web frontend
npm run web-startThe React dev server use http://127.0.0.1:3000/
To build for production:
npm run build## API To see the autogenerated docs: http://127.0.0.1:8000/docs#/ For now, the API URL must be hardcoded in the BASE property of OpenAPI in sulcilab_web/api/code/OpenAPI.ts.
Automatic generation of the typescript client:
npm run api-build## Development
from sqlalchemy import Boolean, Column, ForeignKey, Integer, String, Text, Enum, Float
from sqlalchemy.orm import Session, relationship
from fastapi import APIRouter, Depends, HTTPException
from typing import List
from pydantic import BaseModel
from sulcilab.database import SulciLabBase, Base
from sulcilab.core import crud
from sulcilab.database import SessionLocal, get_db
from sulcilab.core.schemas import SulciLabReadingModel
#############
# ORM Model #
#############
##################
# Pydantic Model #
##################
###################
# CRUD Operations #
###################
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# Routes #
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router = APIRouter()
@router.get("/all", response_model=List[P...])
def read(skip: int = 0, limit: int = 100, db: Session = Depends(get_db)):
# user = get_current_user(db, token)
return crud.get_all(db, ..., skip=skip, limit=limit)sudo ufw allow 3000 npm run web-start --host 0.0.0.0
sudo ufw allow 5000 uvicorn sulcilab.main:app --reload --host 0.0.0.0 --port 5000
If the watch fail limit is reached, before opening bv bash: ``̀ shell echo fs.inotify.max_user_watches=524288 | sudo tee -a /etc/sysctl.conf sudo sysctl -p