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Variant-aware scoring of off-targets for CRISPR Genome Engineering (VARSCOT)

This repository contains the stand-along VARSCOT pipeline as well as the workflows used to construct the model.

VARSCOT_pipeline contains the pipeline and associated files

workflow contains the data and scripts to build the off-target scorign model used by VARSCOT

Please note that some of the files contained within this repository are large (>100MB). To download using git, users will need to install git-lfs (https://git-lfs.github.com/).