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Update Tutorial.md
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@BeeAnka
BeeAnka committed Nov 9, 2022
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Expand Up @@ -32,29 +32,35 @@ Now preprocessing and compression start. Detailed information is given via termi
`"´ `"´ `"´
start compressions
Reading input file: ecoli5010.xml
Ignoring compartments: ['C_b']
Uncompressed network size: 68 reactions ( 12 reversible ) and 56 metabolites.
no empty reactions
Uncompressed network size: 68 reactions ( 11 reversible ) and 56 metabolites.
========================================================================
START COMPRESSIONS
*** Compression round: 1 ***
Start deadend compression...
Done deadend compression. Network size: 56 metabolites and 68 reactions ( 12 reversible )
Done deadend compression. Network size: 56 metabolites and 68 reactions ( 11 reversible )
Start many2one compression...
Done many2one compression. Network size: 28 metabolites and 40 reactions ( 12 reversible )
Done many2one compression. Network size: 27 metabolites and 39 reactions ( 11 reversible )
Start nullspace compression...
Done nullspace compression. Network size: 25 metabolites and 37 reactions ( 12 reversible )
Start null space compressions round 1 . This may take a while
Start null space compressions round 2 . This may take a while
Done nullspace compression. Network size: 25 metabolites and 37 reactions ( 11 reversible )
Start echelon compressions...
Done echelon compression. Network size: 20 metabolites and 37 reactions ( 12 reversible )
Start reduced row echelon form calculations 1 . This may take a while
Start reduced row echelon form calculations 2 . This may take a while
Done echelon compression. Network size: 20 metabolites and 37 reactions ( 11 reversible )
*** Compression round: 2 ***
Start deadend compression...
Done deadend compression. Network size: 20 metabolites and 37 reactions ( 12 reversible )
Done deadend compression. Network size: 20 metabolites and 37 reactions ( 11 reversible )
Start many2one compression...
Done many2one compression. Network size: 20 metabolites and 37 reactions ( 12 reversible )
Done many2one compression. Network size: 20 metabolites and 37 reactions ( 11 reversible )
Start nullspace compression...
Done nullspace compression. Network size: 20 metabolites and 37 reactions ( 12 reversible )
Start null space compressions round 1 . This may take a while
Done nullspace compression. Network size: 20 metabolites and 37 reactions ( 11 reversible )
Start echelon compressions...
Done echelon compression. Network size: 20 metabolites and 37 reactions ( 12 reversible )
Start reduced row echelon form calculations 1 . This may take a while
Done echelon compression. Network size: 20 metabolites and 37 reactions ( 11 reversible )
*** COMPRESSIONS DONE after: 2 rounds ***
========================================================================
Compressed network size: 37 reactions ( 9 reversible ) and 20 metabolites.
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