You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
In printReadName, read names are truncated by following order:
Omit slash mate (/1 or /2) from the end of a read name
Keep first 255 characters
Ignore characters after the first whitespace
However, read names in some fastq files (maybe following the old illumina format) can have both slash mates and additional strings. For example, these are the heads of the paired-end fastq files I got from the ENCODE.
In
printReadName
, read names are truncated by following order:/1
or/2
) from the end of a read nameHowever, read names in some fastq files (maybe following the old illumina format) can have both slash mates and additional strings. For example, these are the heads of the paired-end fastq files I got from the ENCODE.
So I think "slash mates" should be omitted after the other truncations to match read names as pairs.
The text was updated successfully, but these errors were encountered: