Our website is located at bigcat-um.github.io/IMD-PUPY, and our GitHub page at BiGCAT-UM/IMD-PUPY.

This workflow has been developped as an RMarkdown script, in the R programming language (v4.1.3), tested through RStudio16 (v2022.02.2) on a Linux OS (Ubuntu 18.04).

Welcome to the repository of the Inherited Metabolic Disorders Systems Biology workflow! This code repository contains:

1. R script of the workflow, as presented in this manuscript
2. R markdown Document showing the output of the script for an example patient
3. Expert interpretation for all patients (anonymized data available here)
4. Relevant Biomarker overlap and Network visualization for each individual patient.

Any software in this repository is licenced under MIT. Content in this repository which is not software, is licenced as CC BY-NC-SA 4.0