Version 3.3.0

General changes

Major

• Separate instance filtering and statistical measurements with TEST.POST_PROCESSING.MEASURE_PROPERTIES and TEST.POST_PROCESSING.MEASURE_PROPERTIES.REMOVE_BY_PROPERTIES
• Add sphericity (3D), perimeter/surface area (2D/3D) and elongation (2D) calculations using the same formulas as described in MorphoLibJ
• Multi-GPU prediction by chunks (Zarr/H5):
  • Add versatile axis order
  • Fix some overlap errors
• Add data preprocessing options:
  • Resize
  • Gaussian blur
  • Median blur
  • Histogram matching
  • Contrast Limited Adaptive Histogram Equalization (CLAHE)
  • Canny or edge detection (only 2D - grayscale or RGB)
• Change BiaPy into a class so we can call functions individually (e.g. BMZ model exportation)
• Detection:
  • Add overlap in detection during multi-GPU prediction by chunks
  • Now point coords work in global position

Minor

• Add TEST.DET_EXCLUDE_BORDER option

Bugs fixed:

• 2D test time augmentation bug with MODEL.N_CLASSES solved
• Fix bug when TEST.BY_CHUNKS selected using TEST.BY_CHUNKS.INPUT_IMG_AXES_ORDER of len 4.
• Avoid dividing with zero during instance stats