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Cannot install python-irtk #3

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bowlderstudio opened this issue Mar 8, 2018 · 5 comments
Open

Cannot install python-irtk #3

bowlderstudio opened this issue Mar 8, 2018 · 5 comments

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@bowlderstudio
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bowlderstudio commented Mar 8, 2018

I have ubuntu 16.04. I tried to install python-irtk using conda in both python2.7 and python3.5. But no success. Do I use a wrong version of conda?
I get the following error when I install with conda version Anaconda2-5.1.0-Linux-x86_64 (python 2.7):
./conda install -c kevin-keraudren python-irtk
Solving environment: failed

UnsatisfiableError: The following specifications were found to be in conflict:

  • numba
  • python-irtk
    Use "conda info " to see the dependencies for each package.

I get the following error when I install with conda version Anaconda3-4.2.0-Linux-x86_64 (python 3.5):
Fetching package metadata .............
Solving package specifications: .

UnsatisfiableError: The following specifications were found to be in conflict:

  • python 3.5*
  • python-irtk -> irtk -> vtk -> python 2.7*
    Use "conda info " to see the dependencies for each package.
@bowlderstudio
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The problem is solved by install python 2.7 in anaconda3
conda install python=2.7

@XinruiYuan
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Hi, I met the same problem with you, I can't install it neither. But I got the following error is:
PackagesNotFoundError: The following packages are not available from current channels: python-itrk
And my python version is 2.7.
Do you do other prepare work before using Conda ?

@bowlderstudio
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bowlderstudio commented Mar 29, 2018 via email

@kevin-keraudren
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Hi,
The last Anaconda version which I know is compatible with python-irtk is Anaconda-2.1.0, you can have a look at the following installation script:
http://kevin-keraudren.blogspot.co.uk/2014/10/automated-segmentation-of-fetal-brain.html
Please bear in mind that the code of python-irtk has not been modified since October 2015.

@XinruiYuan
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Hi,
I carefully read installation scripts, and installed python-irtk successfully. However, when I tried to "import irtk" , it showed the following error:
import irtk --> imoirt irtk.image -->import _irtk
ImportError: libvtkHybrid.so.5.10: cannot open shared object file: No such file or directory.
And I searched like Issue#1, and I searched nothing?
How can I solve this problem?
Thank you very much.

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