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@IgorRodchenkov
IgorRodchenkov committed Aug 6, 2023
1 parent bc28cdf commit 86dd29c
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56 changes: 32 additions & 24 deletions pom.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -65,7 +65,7 @@
<site>
<!-- do:
mvn site site:stage -DstagingDirectory=/tmp/path
- then manually commit/push to the gh-pages branch. -->
- then manually copy the site and push to the gh-pages branch. -->
<id>github</id>
<name>BioPAX Validator Maven site</name>
<url>https://biopax.github.io/validator/${project.version}</url>
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<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
<github.global.server>github</github.global.server>
<spring.version>5.3.23</spring.version>
<spring.version>5.3.28</spring.version>
<agent>${settings.localRepository}/org/springframework/spring-instrument/${spring.version}/spring-instrument-${spring.version}.jar</agent>
<paxtools.version>5.3.0-SNAPSHOT</paxtools.version>
<paxtools.version>5.2.1</paxtools.version>
<license.licenseName>MIT</license.licenseName>
<jvm.options>-Xmx3g -Dfile.encoding=UTF-8 -ea --add-opens=java.base/java.lang=ALL-UNNAMED --add-opens=java.base/java.lang.reflect=ALL-UNNAMED</jvm.options>
</properties>
Expand All @@ -127,15 +127,15 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.1</version>
<version>3.11.0</version>
<configuration>
<release>17</release>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>versions-maven-plugin</artifactId>
<version>2.7</version>
<version>2.16.0</version>
<configuration>
<generateBackupPoms>false</generateBackupPoms>
</configuration>
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<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>3.2.1</version>
<version>3.3.0</version>
<executions>
<execution>
<id>attach-sources</id>
Expand All @@ -194,7 +194,7 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-site-plugin</artifactId>
<version>3.10.0</version>
<version>3.12.1</version>
<executions>
<execution>
<id>attach-descriptor</id>
Expand All @@ -210,38 +210,42 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-release-plugin</artifactId>
<version>2.5.3</version>
<version>3.0.1</version>
<configuration>
<goals>deploy site-deploy</goals>
<autoVersionSubmodules>true</autoVersionSubmodules>
<useReleaseProfile>false</useReleaseProfile>
<releaseProfiles>sonatype-release-profile</releaseProfiles>
<tagNameFormat>v@{project.version}</tagNameFormat>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>3.3.0</version>
<version>3.3.1</version>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>jaxb2-maven-plugin</artifactId>
<version>2.4</version>
<version>2.5.0</version>
</plugin>
</plugins>
</pluginManagement>
<extensions>
<extension>
<groupId>org.apache.maven.wagon</groupId>
<artifactId>wagon-ssh</artifactId>
<version>2.10</version>
</extension>
<extension>
<groupId>org.apache.maven.wagon</groupId>
<artifactId>wagon-scm</artifactId>
<version>2.10</version>
</extension>
<extension>
<groupId>org.apache.maven.doxia</groupId>
<artifactId>doxia-integration-tools</artifactId>
<version>1.11.1</version>
</extension>
</extensions>
<plugins>
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<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>2.0.1</version>
<version>2.0.7</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>log4j-over-slf4j</artifactId>
<version>2.0.1</version>
<version>2.0.7</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>2.0.1</version>
<version>2.0.7</version>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.4.1</version>
<version>1.4.8</version>
</dependency>
<dependency>
<groupId>junit</groupId>
Expand Down Expand Up @@ -405,7 +409,7 @@
<dependency>
<groupId>org.aspectj</groupId>
<artifactId>aspectjrt</artifactId>
<version>1.9.9.1</version>
<version>1.9.19</version>
</dependency>
<dependency>
<groupId>commons-beanutils</groupId>
Expand All @@ -415,7 +419,7 @@
<dependency>
<groupId>commons-digester</groupId>
<artifactId>commons-digester</artifactId>
<version>1.8.1</version>
<version>2.1</version>
</dependency>
<dependency>
<groupId>commons-collections</groupId>
Expand Down Expand Up @@ -448,7 +452,7 @@
<dependency>
<groupId>commons-io</groupId>
<artifactId>commons-io</artifactId>
<version>2.11.0</version>
<version>2.13.0</version>
</dependency>
<dependency>
<groupId>javax.annotation</groupId>
Expand Down Expand Up @@ -514,6 +518,7 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.5.0</version>
<configuration>
<linksource>true</linksource>
<notimestamp>true</notimestamp>
Expand Down Expand Up @@ -544,6 +549,7 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jxr-plugin</artifactId>
<version>3.3.0</version>
<reportSets>
<reportSet>
<id>aggregate</id>
Expand All @@ -557,6 +563,7 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-project-info-reports-plugin</artifactId>
<version>3.4.5</version>
<configuration>
<dependencyDetailsEnabled>false</dependencyDetailsEnabled>
</configuration>
Expand All @@ -566,15 +573,13 @@
<report>index</report>
<report>summary</report>
<report>modules</report>
<report>cim</report>
<report>dependencies</report>
<report>dependency-info</report>
<report>dependency-management</report>
<report>distribution-management</report>
<report>issue-tracking</report>
<report>license</report>
<report>project-team</report>
<report>mailing-list</report>
<report>issue-management</report>
<report>licenses</report>
<report>team</report>
<report>mailing-lists</report>
<report>scm</report>
</reports>
</reportSet>
Expand All @@ -591,11 +596,12 @@
<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
<version>1.6.13</version>
<extensions>true</extensions>
<configuration>
<serverId>ossrh</serverId>
<nexusUrl>https://oss.sonatype.org/</nexusUrl>
<!-- <autoReleaseAfterClose>true</autoReleaseAfterClose> -->
<autoReleaseAfterClose>true</autoReleaseAfterClose>
</configuration>
</plugin>
<plugin>
Expand All @@ -613,6 +619,7 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.5.0</version>
<executions>
<execution>
<id>attach-javadocs</id>
Expand All @@ -625,6 +632,7 @@
<plugin>
<artifactId>maven-gpg-plugin</artifactId>
<groupId>org.apache.maven.plugins</groupId>
<version>3.1.0</version>
<executions>
<execution>
<id>sign-artifacts</id>
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91 changes: 40 additions & 51 deletions src/site/site.xml
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Original file line number Diff line number Diff line change
@@ -1,54 +1,43 @@
<project name="The BioPAX Validator">

<bannerLeft>
<name>PathwayCommons</name>
<src>http://www.pathwaycommons.org/pc/jsp/images/pathwaycommons/pc_logo.gif</src>
<href>http://code.google.com/p/pathway-commons/</href>
</bannerLeft>

<!--<bannerRight>-->
<!--<name>GitHub</name>-->
<!--<src>http://logo...</src>-->
<!--<href>http://...</href>-->
<!--</bannerRight>-->

<skin>
<groupId>org.apache.maven.skins</groupId>
<artifactId>maven-fluido-skin</artifactId>
<version>1.3.0</version>
</skin>

<custom>
<fluidoSkin>
<sideBarEnabled>true</sideBarEnabled>
<topBarEnabled>true</topBarEnabled>
<profile>production</profile>
<googleSearch>
<sitesearch/>
</googleSearch>
<facebookLike />
<googlePlusOne />
</fluidoSkin>
</custom>

<body>

<breadcrumbs>
<item name="Home" href="../"/>
<item name="Validator ${project.version}" href="./" />
</breadcrumbs>

<links>
<item name="BioPAX" href="http://www.biopax.org/" />
<item name="Docs" href="http://www.biopax.org/validation" />
<item name="Changelog" href="http://biopax.hg.sourceforge.net/hgweb/biopax/validator/shortlog/tip" />
</links>

<menu ref="modules" />

<menu ref="reports" inherit="top"/>


</body>

<bannerLeft>
<name>PathwayCommons</name>
<src>https://www.pathwaycommons.org/pc/jsp/images/pathwaycommons/pc_logo.gif</src>
<href>https://github.com/pathwaycommons/</href>
</bannerLeft>

<skin>
<groupId>org.apache.maven.skins</groupId>
<artifactId>maven-fluido-skin</artifactId>
<version>1.11.2</version>
</skin>

<custom>
<fluidoSkin>
<sideBarEnabled>true</sideBarEnabled>
<topBarEnabled>true</topBarEnabled>
<profile>production</profile>
<googleSearch>
<sitesearch/>
</googleSearch>
<facebookLike/>
<googlePlusOne/>
</fluidoSkin>
</custom>

<body>
<breadcrumbs>
<item name="Home" href="../"/>
<item name="v${project.version}" href="./"/>
</breadcrumbs>
<links>
<item name="BioPAX.org" href="https://www.biopax.org"/>
<item name="Validator" href="https://www.biopax.org/validator"/>
<item name="Docs" href="https://biopax.github.io/validator"/>
<item name="Javadoc" href="apidocs/index.html"/>
<item name="Project" href="https://github.com/BioPAX/validator"/>
</links>
<menu ref="modules"/>
<menu ref="reports" inherit="top"/>
</body>
</project>

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