Multi-omics topic odeling for breast cancer

Notebooks and libraries for "Multi-omics Topic Modeling for Breast Cancer Classification"

Run

You can simply create a Docker container with all dependencies installed

docker run -v $PWD:/home/jovyan/work -p 8888:8888 --rm -it --name topic_tcga docker.pkg.github.com/fvalle1/keywordTCGA/image:latest

then point your browser to localhost

Data

The data processed in our analysis when not available trough git can be accessed via DataVersionControl

dvc pull -r mydrive

Tool

This paper comes with the nsbm tool available which enables the possibility of running multi omics topic modeling on many kind of data.

License

Please see LICENSE