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@BioSystemsUM

BioSystems@CEB - Centre of Biological Engineering

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  1. DeepMol DeepMol Public

    DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

    Python 94 10

  2. MEWpy MEWpy Public

    Metabolic Engineering Workbench

    Python 35 11

  3. propythia propythia Public

    Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.

    Jupyter Notebook 27 9

  4. troppo troppo Public

    Reconstruction algorithms for Python

    Jupyter Notebook 22 5

  5. cobamp cobamp Public

    Constraint-based modeling framework for the enumeration of pathway analysis concepts

    Jupyter Notebook 14 2

  6. ReactEA ReactEA Public

    ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design

    Python 7 1

Repositories

Showing 10 of 27 repositories
  • troppo Public

    Reconstruction algorithms for Python

    BioSystemsUM/troppo’s past year of commit activity
    Jupyter Notebook 22 GPL-3.0 5 3 (1 issue needs help) 0 Updated Jul 19, 2024
  • DeepMol Public

    DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

    BioSystemsUM/DeepMol’s past year of commit activity
    Python 94 BSD-2-Clause 10 16 0 Updated Jul 18, 2024
  • s2m2 Public

    Materials for the Summer School in Metabolic Modeling - 2024 edition

    BioSystemsUM/s2m2’s past year of commit activity
    Jupyter Notebook 5 GPL-2.0 2 0 0 Updated Jul 4, 2024
  • BioCatalyzer Public

    BioCatalyzer: a rule-based tool to predict compound metabolism

    BioSystemsUM/BioCatalyzer’s past year of commit activity
    Python 5 MIT 0 0 0 Updated Jun 28, 2024
  • MEWpy Public

    Metabolic Engineering Workbench

    BioSystemsUM/MEWpy’s past year of commit activity
    Python 35 GPL-3.0 11 3 0 Updated Jun 9, 2024
  • deepmol_case_studies Public

    Case Studies from the DeepMol Publication

    BioSystemsUM/deepmol_case_studies’s past year of commit activity
    Jupyter Notebook 1 BSD-2-Clause 0 0 0 Updated Jun 4, 2024
  • biomeneco Public

    A project to accelerate gap-filling of metabolic models

    BioSystemsUM/biomeneco’s past year of commit activity
    1 MIT 0 0 1 Updated Dec 5, 2023
  • propythia Public

    Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.

    BioSystemsUM/propythia’s past year of commit activity
    Jupyter Notebook 27 GPL-3.0 9 0 2 Updated Sep 4, 2023
  • ReactEA Public

    ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design

    BioSystemsUM/ReactEA’s past year of commit activity
    Python 7 GPL-3.0 1 2 0 Updated Jul 18, 2023
  • cobamp Public

    Constraint-based modeling framework for the enumeration of pathway analysis concepts

    BioSystemsUM/cobamp’s past year of commit activity
    Jupyter Notebook 14 GPL-3.0 2 1 2 Updated Jul 6, 2023

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