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geyser #3107
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Hi @davemcg Thanks for submitting your package. We are taking a quick The DESCRIPTION file for this package is:
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A reviewer has been assigned to your package. Learn what to expect IMPORTANT: Please read this documentation for setting Bioconductor utilized your github ssh-keys for git.bioconductor.org |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on the Bioconductor Build System. On one or more platforms, the build results were: "ERROR, skipped". Please see the build report for more details. The following are build products from R CMD build on the Bioconductor Build Links above active for 21 days. Remember: if you submitted your package after July 7th, 2020, |
Received a valid push on git.bioconductor.org; starting a build for commit id: 5e27d2762851adf1d54916a8c3f0f61fb7d43398 |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on the Bioconductor Build System. On one or more platforms, the build results were: "ERROR". Please see the build report for more details. The following are build products from R CMD build on the Bioconductor Build Links above active for 21 days. Remember: if you submitted your package after July 7th, 2020, |
I believe the only error now is because I haven't set up a The only other |
Is the LICENSE text required to mention "third party software"? What are the "third-party packages" mentioned there? |
I believe that third party packages are anything not me (so other libraries/packages). Is there better language I should use? |
You aren't redistributing any other libraries or packages. I think you could take that clause out? You are using names of functions in other packages or calling such functions, but does that behavior need to be regulated by license text? |
I've tweaked the text (the first block is just for line formatting and a missing space) of the LICENSE. I've simplified the language of the last paragraph. I'm a bit nervous about removing it entirely as l believe lawyers had some role in crafting this. I can increment the version if this edit is helpful (I'm still awaiting a response on getting access to my bioconductor account so I can add the |
Please see my comments below and come back with any questions you might have, as well as what has/not been addressed when ready; thanks! code
documentation
other
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Hy @davemcg, I tried to run the vignette also with the interactive chunks of code to launch the app. At this point https://github.com/davemcg/geyser/blob/c2747ad0ea1aef68948b36c3fa43671c046057de/vignettes/Gene_Expression_Plotting_GUI.Rmd#L157
This can be because the "conversion" step you introduce does drop the info you need? You can compare the two objects here:
Actually, an even better (IMO) selling point is that you can simply pass the
... which captures the full extent of relevant colData HTH, |
@davemcg just wanted to check in that you saw the comments from above and are working on updates? |
I have! Appreciate all the comments - I've been trying to address other work and haven't had time to come back to this. Hoping to address these soon. |
0.99.2 pushed which I hope addresses all of the comments (and doesn't create new issues). Happy end of 2023 everyone. |
it doesn't look like a push was made to git.bioconductor.org as that still has 0.99.1 Please push to git.bioconductor.org to trigger a new build. |
Received a valid push on git.bioconductor.org; starting a build for commit id: f9b7f99a9e46749b48070425b874e4ec32cdb4e3 |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on the Bioconductor Single Package Builder. On one or more platforms, the build results were: "ERROR". Please see the build report for more details. The following are build products from R CMD build on the Single Package Builder: Links above active for 21 days. Remember: if you submitted your package after July 7th, 2020, |
Hmm, missed an "=" that should have been a "<-". Will fix that for the next release. The testing works on my computer....that said the error thrown is a warning for me? Hmm I just updated my bslib to 0.6.1 and now and throwing an error. I'll look into that. |
Received a valid push on git.bioconductor.org; starting a build for commit id: 5ed732cb1f9bf3fc8353b48b5cbd4af452b40091 |
OK, fixed some small things (assignment <-, removed ds_store, removed trailing comma that was throwing an error). Hopefully this will build. |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on the Bioconductor Single Package Builder. On one or more platforms, the build results were: "ERROR". Please see the build report for more details. The following are build products from R CMD build on the Single Package Builder: Links above active for 21 days. Remember: if you submitted your package after July 7th, 2020, |
Great - the only error is my inability to add "geyser" to the watch list (as I cannot reset my password on the bioc support forum to log in). |
I just tested the password reset on the support site and it works for me. Are you not getting the reset email at all (have you checked your spam folder?) ? or do you try to set it and then you still cannot login? |
I don't get the reset email at all...nothing in my junk folder either.... |
I will email you off list with a few options and some follow up questions. |
Lori Kern (couldn't find github profile) reset my account. I've created a new account and added geyser to my watch list. I re-ran BiocCheck::BiocCheck() and now I'm at zero errors. Should I bump the version increment to re-run the server testing? |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on the Bioconductor Single Package Builder. On one or more platforms, the build results were: "WARNINGS". Please see the build report for more details. The following are build products from R CMD build on the Single Package Builder: Links above active for 21 days. Remember: if you submitted your package after July 7th, 2020, |
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