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tRNAscan2GRanges #607
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Hi @FelixErnst Thanks for submitting your package. We are taking a quick The DESCRIPTION file for this package is:
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Your package has been approved for building. Your package is IMPORTANT: Please read the instructions for setting |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. On one or more platforms, the build results were: "ERROR". Please see the build report for more details. |
There is a lot of low-hanging fruit for optimization and cleanup. The vignette needs to be developed: what is the tRNA-SE format, where is it encountered, what are some typical things people do with the data once they've imported it? The vignette section on the "Literature" seems to contain the wrong content. |
@lawremi I added some more detailed information in the vignette. Could you specify, what you mean with cleanup? Apart from the little example case scenario, which is now part of the vignette, a typical usage case will be part of a follow up package, but I wanted to split this functionality since it is straight forward and contained. |
Received a valid push; starting a build. Commits are: be41728 version bump |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. Congratulations! The package built without errors or warnings Please see the build report for more details. |
By cleanup I mean the parser code. It should be vectorized, rather than looping over rows and blocks in R. |
Received a valid push; starting a build. Commits are: abcc7b8 vectorized text block parsing |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. Congratulations! The package built without errors or warnings Please see the build report for more details. |
Thanks for insisting. I previously didn't come up with a vectorized solution. Learned something :) |
Received a valid push; starting a build. Commits are: bdc433b version bump |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. Congratulations! The package built without errors or warnings Please see the build report for more details. |
Received a valid push; starting a build. Commits are: adac41a version bump |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. On one or more platforms, the build results were: "WARNINGS". Please see the build report for more details. |
Received a valid push; starting a build. Commits are: c8d668d version bump |
Received a valid push; starting a build. Commits are: 3697940 version bump |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. Congratulations! The package built without errors or warnings Please see the build report for more details. |
I added some visualization to the vignette and removed some clashes with gff3 naming conventions. Currently I don't have anything more to add. |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. Congratulations! The package built without errors or warnings Please see the build report for more details. |
Hi @FelixErnst , |
Received a valid push; starting a build. Commits are: 04bf25f corrected spelling mistakes in the vignette |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. Congratulations! The package built without errors or warnings Please see the build report for more details. |
Received a valid push; starting a build. Commits are: b3a1fb2 - vignette text changes - fixed spelling mistakes |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. Congratulations! The package built without errors or warnings Please see the build report for more details. |
Hi @hpages, any news? |
Hi @hpages |
Hi @FelixErnst, I got distracted, sorry. I took a first look at tRNAscan2GRanges and have some feedback for you. See below. Please let me know or ask on the bioc-devel mailing list if you have any question or concern about this. Thanks,
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@hpages Thanks for the feedback. In any case: After renaming the package, the github URL would change. Would I need to resubmit it under the new name? |
Received a valid push; starting a build. Commits are: 64b9620 restructuring based on BioC submission comments |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. On one or more platforms, the build results were: "skipped, ERROR". Please see the build report for more details. |
Received a valid push; starting a build. Commits are: f6bd49e BiocCheck fixes |
Dear Package contributor, This is the automated single package builder at bioconductor.org. Your package has been built on Linux, Mac, and Windows. On one or more platforms, the build results were: "skipped, ERROR". Please see the build report for more details. |
First things first: Thanks again for the feedback. First submissions are always tricky and the feedback is so important to learn from ones "mistakes".
Since the build broke because of some path not found, I assume it was because of the renaming. The Webhook also does not work anymore, since the BioC build system does not know about the package with the new name. ("Sorry, you haven't told us about this repository, please go to https://github.com/Bioconductor/Contributions/issues/new .") I opened another issue with renamed package: #645 |
Yes, opening a new issue is the right procedure. I'll close this one and follow-up on the new one. Thanks! |
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