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> suppressPackageStartupMessages(library(GenomeInfoDb)) > Seqinfo(genome="hg38") Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
> sessionInfo() R version 4.1.2 (2021-11-01) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Arch Linux Matrix products: default BLAS: /usr/lib/libblas.so.3.10.0 LAPACK: /usr/lib/liblapack.so.3.10.0 locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets [8] methods base other attached packages: [1] GenomeInfoDb_1.28.4 IRanges_2.26.0 S4Vectors_0.30.2 [4] BiocGenerics_0.38.0 loaded via a namespace (and not attached): [1] compiler_4.1.2 GenomeInfoDbData_1.2.6 RCurl_1.98-1.5 [4] bitops_1.0-7
The text was updated successfully, but these errors were encountered:
See issues #30 and #31, and also https://support.bioconductor.org/p/9140106/ and https://support.bioconductor.org/p/9140410/ on the support site.
TLDR: This is fixed in BioC 3.14 so it's time to upgrade ;-)
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This issue seems to have re-appeared, see #82
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SessionInfo
The text was updated successfully, but these errors were encountered: