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DESCRIPTION
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DESCRIPTION
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Package: tripr
Type: Package
Title: T-cell Receptor/Immunoglobulin Profiler (TRIP)
Version: 1.9.12
Authors@R: c(
person("Maria Th.", "Kotouza", email = "-", role = "aut"),
person("Katerina", "Gemenetzi", email = "-", role = "aut"),
person("Chrysi", "Galigalidou", email = "-", role = "aut"),
person("Elisavet", "Vlachonikola", email = "-", role = "aut"),
person("Nikolaos", "Pechlivanis", email = "inab.bioinformatics@lists.certh.gr", role = "cre"),
person("Andreas", "Agathangelidis", email = "-", role = "aut"),
person("Raphael", "Sandaltzopoulos", email = "-", role = "aut"),
person("Pericles A.", "Mitkas", email = "-", role = "aut"),
person("Kostas", "Stamatopoulos", email = "-", role = "aut"),
person("Anastasia", "Chatzidimitriou", email = "-", role = "aut"),
person("Fotis E.", "Psomopoulos", email = "-", role = "aut"),
person("Iason", "Ofeidis", email = "-", role = "aut"),
person("Aspasia", "Orfanou", email = "-", role = "aut")
)
Description: TRIP is a software framework that provides analytics services on
antigen receptor (B cell receptor immunoglobulin, BcR IG | T cell receptor,
TR) gene sequence data. It is a web application written in R Shiny. It takes
as input the output files of the IMGT/HighV-Quest tool. Users can select to
analyze the data from each of the input samples separately, or the combined
data files from all samples and visualize the results accordingly.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
biocViews:
BatchEffect,
MultipleComparison,
GeneExpression,
ImmunoOncology,
TargetedResequencing
Imports:
shinyjs,
shinyFiles,
plyr,
data.table,
DT,
stringr,
stringdist,
plot3D,
gridExtra,
RColorBrewer,
plotly,
dplyr,
config (>= 0.3.1),
golem (>= 0.3.1),
methods,
grDevices,
graphics,
stats,
utils
Enhances:
parallel
Suggests:
BiocGenerics,
shinycssloaders,
tidyverse,
BiocManager,
Biostrings,
xtable,
rlist,
motifStack,
knitr,
rmarkdown,
testthat (>= 3.0.0),
fs,
BiocStyle,
RefManageR,
biocthis,
pryr
Depends:
shiny (>= 1.6.0),
shinyBS
Collate:
"tripr-package.R"
"global.R"
"helpers.R"
"run_TRIP_without_ui.R"
"app_config.R"
"app_server.R"
"app_ui.R"
"run_app.R"
"zzz.R"
URL: https://github.com/BiodataAnalysisGroup/tripr
BugReports: https://github.com/BiodataAnalysisGroup/tripr/issues
BiocType: Software
RoxygenNote: 7.2.0
VignetteBuilder: knitr
Config/testthat/edition: 3